E430024I08Rik Gene Detail

Summary

• Symbol
  E430024I08Rik
• Name
  RIKEN cDNA E430024I08 gene
• Synonyms
  EG622175

• Feature Type
  lncRNA gene
• IDs
  MGI:3649010
  NCBI Gene: 622175
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:74580343-74611722 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649010	lncRNA gene	Chr13:74579825-74611722 (-)
129S1/SvImJ	ENSMUSG00200013576	lncRNA gene	Chr13:68985535-69016045 (-)
A/J	ENSMUSG00195029743	lncRNA gene	Chr13:69560209-69590718 (-)
AKR/J	ENSMUSG00220038916	lncRNA gene	Chr13:68151359-68181869 (-)
BALB/cJ	ENSMUSG00180027702	lncRNA gene	Chr13:70058523-70089034 (-)
C3H/HeJ	ENSMUSG00175008830	lncRNA gene	Chr13:70336823-70367332 (-)
C57BL/6NJ	ENSMUSG00215013517	lncRNA gene	Chr13:70124835-70155344 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012135	lncRNA gene	Chr13:69625175-69655693 (-)
CBA/J	ENSMUSG00210009981	lncRNA gene	Chr13:69660122-69690630 (-)
DBA/2J	ENSMUSG00185018742	lncRNA gene	Chr13:73351668-73382177 (-)
FVB/NJ	ENSMUSG00205028131	lncRNA gene	Chr13:69038716-69069225 (-)
JF1/MsJ	ENSUMUG00000031774	lncRNA gene	Chr13:73095852-73126370 (-)
LP/J	ENSMUSG00230027639	lncRNA gene	Chr13:83270345-83300852 (-)
NOD/ShiLtJ	ENSMUSG00190042016	lncRNA gene	Chr13:69658712-69689238 (-)
NZO/HlLtJ	ENSMUSG00225028299	lncRNA gene	Chr13:75777300-75807809 (-)
PWK/PhJ	ENSLUMG00010012368	lncRNA gene	Chr13:69154444-69184833 (-)
SPRET/EiJ	ENSMSPG00010032758	lncRNA gene	Chr13:70063044-70099357 (-)
WSB/EiJ	ENSIUOG00005024373	lncRNA gene	Chr13:68894124-68924638 (-)

Homology

• Gene Tree
  E430024I08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving E430024I08Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  74
• RefSeq
  7

• Ensembl
  ENSMUSG00000112964 (Evidence)
• NCBI Gene
  622175

Representative Sequences			Length	Strain/Species
genomic	622175	NCBI Gene Model | MGI Sequence Detail	31380	C57BL/6J
transcript	AK088726	GenBank | ENA | DDBJ | MGI Sequence Detail	1686	NOD

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for E430024I08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123221	Chr13:74610777-74610823 (-)	922 bp