Gm6403 Gene Detail

Summary

• Symbol
  Gm6403
• Name
  predicted gene 6403

• Feature Type
  lncRNA gene
• IDs
  MGI:3648997
  NCBI Gene: 623172
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:194300519-194303207 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648997	lncRNA gene	Chr1:194300519-194303207 (-)
129S1/SvImJ	ENSMUSG00200004728	lncRNA gene	Chr1:192093816-192096488 (-)
A/J	ENSMUSG00195008942	lncRNA gene	Chr1:191676329-191679063 (-)
AKR/J	ENSMUSG00220005144	lncRNA gene	Chr1:190923674-190926434 (-)
BALB/cJ	ENSMUSG00180020632	lncRNA gene	Chr1:191743235-191745983 (-)
C3H/HeJ	ENSMUSG00175022306	lncRNA gene	Chr1:191950421-191953155 (-)
C57BL/6NJ	ENSMUSG00215020924	lncRNA gene	Chr1:191136859-191139536 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002246	lncRNA gene	Chr1:189705095-189707979 (-)
CBA/J	ENSMUSG00210003923	lncRNA gene	Chr1:191609265-191612008 (-)
DBA/2J	ENSMUSG00185010959	lncRNA gene	Chr1:196210004-196212740 (-)
FVB/NJ	ENSMUSG00205004914	lncRNA gene	Chr1:190578176-190580961 (-)
JF1/MsJ	ENSUMUG00000008595	lncRNA gene	Chr1:195187574-195190379 (-)
LP/J	ENSMUSG00230002261	lncRNA gene	Chr1:195712669-195715346 (-)
NOD/ShiLtJ	ENSMUSG00190032838	lncRNA gene	Chr1:191581875-191584637 (-)
NZO/HlLtJ	ENSMUSG00225016228	lncRNA gene	Chr1:199468492-199471246 (-)
PWK/PhJ	ENSLUMG00010006881	lncRNA gene	Chr1:190427818-190430606 (-)
SPRET/EiJ	ENSMSPG00010025923	lncRNA gene	Chr1:193929167-193932032 (-)
WSB/EiJ	ENSIUOG00005005214	lncRNA gene	Chr1:190900996-190903759 (-)

Homology

• Gene Tree
  Gm6403
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121086 (Evidence)
• NCBI Gene
  623172

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121086	Ensembl Gene Model | MGI Sequence Detail	2689	C57BL/6J
transcript	ENSMUST00000247092	Ensembl | MGI Sequence Detail	2689	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15864	Chr1:194303172-194303189 (-)	26 bp