Gm9257 Pseudogene Detail

Summary

• Symbol
  Gm9257
• Name
  predicted gene 9257

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648973
  NCBI Gene: 668588
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19656930-19673086 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648973	pseudogene	Chr12:19656597-19709187 (+)
129S1/SvImJ	ENSMUSG00200024589	pseudogene	Chr12:15306323-15321508 (+)
A/J	ENSMUSG00195020748	pseudogene	Chr12:14980185-14997937 (+)
A/J	ENSMUSG00195020736	pseudogene	Chr12:17229345-17229470 (-)
A/J	ENSMUSG00195020758	pseudogene	Chr12:17580612-17594329 (+)
AKR/J	ENSMUSG00220029313	pseudogene	Chr12:16566885-16580597 (-)
AKR/J	ENSMUSG00220029338	pseudogene	Chr12:16182022-16182147 (+)
BALB/cJ	ENSMUSG00180010513	pseudogene	Chr12:17530998-17544708 (-)
BALB/cJ	ENSMUSG00180010518	pseudogene	Chr12:16037098-16037223 (+)
C3H/HeJ	ENSMUSG00175006192	pseudogene	Chr12:14994647-15012402 (+)
C57BL/6NJ	ENSMUSG00215005789	pseudogene	Chr12:16033938-16050096 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006574	pseudogene	Chr12:15589813-15607892 (-)
CAST/EiJ	ENSTCUG00005006578	pseudogene	Chr12:14701097-14701222 (+)
CAST/EiJ	ENSTCUG00005006576	pseudogene	Chr12:17696571-17712187 (-)
CBA/J	ENSMUSG00210008653	pseudogene	Chr12:15931964-15951402 (-)
CBA/J	ENSMUSG00210008657	pseudogene	Chr12:16264341-16264466 (-)
CBA/J	ENSMUSG00210008665	pseudogene	Chr12:16010217-16023812 (+)
CBA/J	ENSMUSG00210008669	pseudogene	Chr12:16459445-16474632 (+)
CBA/J	ENSMUSG00210008660	pseudogene	Chr12:15006573-15024328 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205001943	pseudogene	Chr12:14840022-14855216 (+)
FVB/NJ	ENSMUSG00205001940	pseudogene	Chr12:17022592-17037602 (-)
JF1/MsJ	ENSUMUG00000011520	pseudogene	Chr12:16557849-16574005 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014286	pseudogene	Chr12:16201468-16219223 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004735	pseudogene	Chr12:17677222-17693413 (-)
PWK/PhJ	ENSLUMG00010004738	pseudogene	Chr12:17843588-17843713 (-)
SPRET/EiJ	ENSMSPG00010003462	pseudogene	Chr12:16266201-16281479 (+)
SPRET/EiJ	ENSMSPG00010003459	pseudogene	Chr12:18124680-18140300 (-)
WSB/EiJ	ENSIUOG00005001891	pseudogene	Chr12:16070976-16071098 (+)
WSB/EiJ	ENSIUOG00005001889	pseudogene	Chr12:15578850-15578975 (-)

Homology

• Gene Tree
  Gm9257
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  3

• Ensembl
  ENSMUSG00000113957 (Evidence)
• NCBI Gene
  668588

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113957	Ensembl Gene Model | MGI Sequence Detail	16157	C57BL/6J
transcript	ENSMUST00000221254	Ensembl | MGI Sequence Detail	232	Not Applicable
polypeptide	XP_006515363	RefSeq | MGI Sequence Detail	155	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:110088 Taniwaki T, et al., Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Dev Growth Differ. 2005 Apr;47(3):163-72