6230426M11Rik Gene Detail

Summary

• Symbol
  6230426M11Rik
• Name
  RIKEN cDNA 6230426M11 gene
• Synonyms
  EG668056

• Feature Type
  lncRNA gene
• IDs
  MGI:3648960
  NCBI Gene: 100504301
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:104718275-104719118 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 54.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648960	lncRNA gene	Chr12:104718275-104719118 (+)
129S1/SvImJ	ENSMUSG00200027617	lncRNA gene	Chr12:96483299-96483931 (+)
A/J	ENSMUSG00195021043	lncRNA gene	Chr12:99046730-99047362 (+)
AKR/J	ENSMUSG00220044415	lncRNA gene	Chr12:96920854-96921486 (+)
BALB/cJ	ENSMUSG00180036937	lncRNA gene	Chr12:98230592-98231224 (+)
C3H/HeJ	ENSMUSG00175033751	lncRNA gene	Chr12:100858905-100859537 (+)
C57BL/6NJ	ENSMUSG00215041850	lncRNA gene	Chr12:97521034-97521666 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021537	lncRNA gene	Chr12:96978481-96979113 (+)
CBA/J	ENSMUSG00210015136	lncRNA gene	Chr12:97922515-97923147 (+)
DBA/2J	ENSMUSG00185047223	lncRNA gene	Chr12:99688758-99689390 (+)
FVB/NJ	ENSMUSG00205020098	lncRNA gene	Chr12:96913095-96913727 (+)
JF1/MsJ	ENSUMUG00000036304	lncRNA gene	Chr12:104422582-104423214 (+)
LP/J	ENSMUSG00230032735	lncRNA gene	Chr12:106748647-106749279 (+)
NOD/ShiLtJ	ENSMUSG00190033279	lncRNA gene	Chr12:88289353-88289985 (-)
NZO/HlLtJ	ENSMUSG00225038675	lncRNA gene	Chr12:108485576-108486208 (+)
PWK/PhJ	ENSLUMG00010013439	lncRNA gene	Chr12:97863539-97864171 (+)
SPRET/EiJ	ENSMSPG00010021041	lncRNA gene	Chr12:100247134-100247775 (+)
WSB/EiJ	ENSIUOG00005009944	lncRNA gene	Chr12:96929745-96930377 (+)

Homology

• Gene Tree
  6230426M11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 6230426M11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120051 (Evidence)
• NCBI Gene
  100504301

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120051	Ensembl Gene Model | MGI Sequence Detail	844	C57BL/6J
transcript	ENSMUST00000241131	Ensembl | MGI Sequence Detail	844	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for 6230426M11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114884	Chr12:104718439-104718483 (+)	186 bp