Gm4954 Pseudogene Detail

Summary

• Symbol
  Gm4954
• Name
  predicted gene 4954

• Feature Type
  pseudogene
• IDs
  MGI:3648917
  NCBI Gene: 240895
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:166589714-166598054 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 74.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648917	pseudogene	Chr1:166589714-166598063 (+)
129S1/SvImJ	ENSMUSG00200046922	pseudogene	Chr1:164093377-164101717 (+)
A/J	ENSMUSG00195049868	pseudogene	Chr1:163400240-163408580 (+)
AKR/J	ENSMUSG00220014368	pseudogene	Chr1:163123775-163132115 (+)
BALB/cJ	ENSMUSG00180046421	pseudogene	Chr1:163645571-163653911 (+)
C3H/HeJ	ENSMUSG00175047552	pseudogene	Chr1:163749064-163757404 (+)
C57BL/6NJ	ENSMUSG00215045585	pseudogene	Chr1:163527160-163535500 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009346	pseudogene	Chr1:157147913-157149510 (+)
CAST/EiJ	ENSTCUG00005021824	pseudogene	Chr1:162131542-162133137 (+)
CBA/J	ENSMUSG00210042249	pseudogene	Chr1:163616767-163625107 (+)
DBA/2J	ENSMUSG00185012058	pseudogene	Chr1:167848598-167850175 (+)
FVB/NJ	ENSMUSG00205039126	pseudogene	Chr1:162627251-162628845 (+)
JF1/MsJ	ENSUMUG00000012374	pseudogene	Chr1:167006782-167008359 (+)
LP/J	ENSMUSG00230027339	pseudogene	Chr1:167480552-167488892 (+)
NOD/ShiLtJ	ENSMUSG00190041443	pseudogene	Chr1:163427344-163428938 (+)
NZO/HlLtJ	ENSMUSG00225005151	pseudogene	Chr1:171066366-171074706 (+)
PWK/PhJ	ENSLUMG00010046169	pseudogene	Chr1:162373039-162374616 (+)
SPRET/EiJ	ENSMSPG00010048959	pseudogene	Chr1:165863520-165865111 (+)
WSB/EiJ	ENSIUOG00005039454	pseudogene	Chr1:162864826-162866421 (+)

Homology

• Gene Tree
  Gm4954
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm4954
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085841 (Evidence)
• NCBI Gene
  240895

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085841	Ensembl Gene Model | MGI Sequence Detail	8341	C57BL/6J
transcript	ENSMUST00000135069	Ensembl | MGI Sequence Detail	1601	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm4954:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9876	Chr1:166589701-166589711 (+)	-8 bp