Gm8880 Pseudogene Detail

Summary

• Symbol
  Gm8880
• Name
  predicted gene 8880

• Feature Type
  pseudogene
• IDs
  MGI:3648900
  NCBI Gene: 108168443
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:88002823-88003276 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 39.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648900	pseudogene	ChrX:88002791-88003300 (+)
129S1/SvImJ	ENSMUSG00200032654	pseudogene	ChrX:70012255-70012708 (+)
A/J	ENSMUSG00195031730	pseudogene	ChrX:73733764-73734217 (+)
AKR/J	ENSMUSG00220028993	pseudogene	ChrX:68624886-68625339 (+)
BALB/cJ	ENSMUSG00180024543	pseudogene	ChrX:70284576-70285029 (+)
C3H/HeJ	ENSMUSG00175019146	pseudogene	ChrX:73914366-73914819 (+)
C57BL/6NJ	ENSMUSG00215016142	pseudogene	ChrX:70432491-70432944 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029329	pseudogene	ChrX:71507932-71508385 (+)
CBA/J	ENSMUSG00210036462	pseudogene	ChrX:70629171-70629624 (+)
DBA/2J	ENSMUSG00185032166	pseudogene	ChrX:82964754-82965207 (+)
FVB/NJ	ENSMUSG00205019346	pseudogene	ChrX:69932354-69932807 (+)
JF1/MsJ	ENSUMUG00000022850	pseudogene	ChrX:103771546-103771999 (+)
LP/J	ENSMUSG00230010558	pseudogene	ChrX:89619002-89619455 (+)
NOD/ShiLtJ	ENSMUSG00190025202	pseudogene	ChrX:69972891-69973344 (+)
NZO/HlLtJ	ENSMUSG00225046117	pseudogene	ChrX:94755044-94755497 (+)
PWK/PhJ	ENSLUMG00010035338	pseudogene	ChrX:69445151-69445604 (+)
SPRET/EiJ	ENSMSPG00010033449	pseudogene	ChrX:73288960-73289294 (+)
WSB/EiJ	ENSIUOG00005043152	pseudogene	ChrX:70542552-70543005 (+)

Homology

• Gene Tree
  Gm8880
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081167 (Evidence)
• NCBI Gene
  108168443

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081167	Ensembl Gene Model | MGI Sequence Detail	454	C57BL/6J
transcript	ENSMUST00000121800	Ensembl | MGI Sequence Detail	454	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8880:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161461	ChrX:88002789-88002790 (+)	-33 bp