Gm6430 Pseudogene Detail

Summary

• Symbol
  Gm6430
• Name
  predicted gene 6430

• Feature Type
  pseudogene
• IDs
  MGI:3648857
  NCBI Gene: 623430
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:96952406-96953653 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.76 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648857	pseudogene	Chr1:96952125-96954280 (+)
129S1/SvImJ	ENSMUSG00200000264	pseudogene	Chr1:94136093-94137340 (+)
A/J	ENSMUSG00195000396	pseudogene	Chr1:93662601-93663848 (+)
AKR/J	ENSMUSG00220000337	pseudogene	Chr1:93919732-93920979 (+)
BALB/cJ	ENSMUSG00180005696	pseudogene	Chr1:93970318-93971565 (+)
C3H/HeJ	ENSMUSG00175005575	pseudogene	Chr1:93870380-93871627 (+)
C57BL/6NJ	ENSMUSG00215000402	pseudogene	Chr1:93858676-93859923 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000146	pseudogene	Chr1:93613839-93615086 (+)
CBA/J	ENSMUSG00210000129	pseudogene	Chr1:93720398-93721645 (+)
DBA/2J	ENSMUSG00185014527	pseudogene	Chr1:98193389-98194636 (+)
FVB/NJ	ENSMUSG00205000862	pseudogene	Chr1:93073792-93075039 (+)
JF1/MsJ	ENSUMUG00000022924	pseudogene	Chr1:96958170-96959403 (+)
LP/J	ENSMUSG00230024306	pseudogene	Chr1:97457010-97458257 (+)
NOD/ShiLtJ	ENSMUSG00190000344	pseudogene	Chr1:93782424-93783671 (+)
NZO/HlLtJ	ENSMUSG00225003969	pseudogene	Chr1:101363127-101364374 (+)
PWK/PhJ	ENSLUMG00010006732	pseudogene	Chr1:93338094-93339341 (+)
SPRET/EiJ	ENSMSPG00010000935	pseudogene	Chr1:95421418-95422077 (+)
WSB/EiJ	ENSIUOG00005000325	pseudogene	Chr1:93450725-93451972 (+)

Homology

• Gene Tree
  Gm6430
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6430
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000044757 (Evidence)
• NCBI Gene
  623430

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044757	Ensembl Gene Model | MGI Sequence Detail	1248	C57BL/6J
transcript	ENSMUST00000054664	Ensembl | MGI Sequence Detail	1248	Not Applicable

Other
Accession IDs

MGI:3642226

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6430:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8229	Chr1:96952123-96952141 (+)	-274 bp