Gm5369 Pseudogene Detail

Summary

• Symbol
  Gm5369
• Name
  predicted gene 5369

• Feature Type
  pseudogene
• IDs
  MGI:3648848
  NCBI Gene: 384967
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:94021515-94022102 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 48.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648848	pseudogene	Chr9:94021486-94023120 (+)
129S1/SvImJ	ENSMUSG00200005938	pseudogene	Chr9:91146934-91147521 (+)
A/J	ENSMUSG00195007592	pseudogene	Chr9:90396442-90397029 (+)
AKR/J	ENSMUSG00220020464	pseudogene	Chr9:90791937-90792524 (+)
BALB/cJ	ENSMUSG00180007326	pseudogene	Chr9:90716163-90716750 (+)
C3H/HeJ	ENSMUSG00175004723	pseudogene	Chr9:91052215-91052802 (+)
C57BL/6NJ	ENSMUSG00215010578	pseudogene	Chr9:91036049-91036636 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004356	pseudogene	Chr9:90883378-90883965 (+)
CBA/J	ENSMUSG00210005923	pseudogene	Chr9:90898339-90898926 (+)
DBA/2J	ENSMUSG00185002176	pseudogene	Chr9:91071582-91072169 (+)
FVB/NJ	ENSMUSG00205005090	pseudogene	Chr9:91110550-91111137 (+)
JF1/MsJ	ENSUMUG00000029320	pseudogene	Chr9:90807056-90807643 (+)
LP/J	ENSMUSG00230009619	pseudogene	Chr9:91252807-91253394 (+)
NOD/ShiLtJ	ENSMUSG00190011329	pseudogene	Chr9:90718560-90719147 (+)
NZO/HlLtJ	ENSMUSG00225016678	pseudogene	Chr9:91383324-91383911 (+)
PWK/PhJ	ENSLUMG00010003189	pseudogene	Chr9:90780913-90781500 (+)
SPRET/EiJ	ENSMSPG00010003921	pseudogene	Chr9:92586745-92587358 (+)
WSB/EiJ	ENSIUOG00005003709	pseudogene	Chr9:90133070-90133657 (+)

Homology

• Gene Tree
  Gm5369
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5369
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111352 (Evidence)
• NCBI Gene
  384967

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111352	Ensembl Gene Model | MGI Sequence Detail	588	C57BL/6J
transcript	ENSMUST00000217499	Ensembl | MGI Sequence Detail	588	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;