Gm9403 Pseudogene Detail

Summary

• Symbol
  Gm9403
• Name
  predicted gene 9403

• Feature Type
  pseudogene
• IDs
  MGI:3648825
  NCBI Gene: 668858
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:132548157-132550337 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 61.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648825	pseudogene	Chr3:132548066-132550740 (+)
129S1/SvImJ	ENSMUSG00200003974	pseudogene	Chr3:129323371-129325548 (+)
A/J	ENSMUSG00195008733	pseudogene	Chr3:129429569-129431751 (+)
AKR/J	ENSMUSG00220023532	pseudogene	Chr3:127869984-127872166 (+)
BALB/cJ	ENSMUSG00180003952	pseudogene	Chr3:129358466-129360647 (+)
C3H/HeJ	ENSMUSG00175014635	pseudogene	Chr3:128932208-128934389 (+)
C57BL/6NJ	ENSMUSG00215026086	pseudogene	Chr3:129703795-129705976 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011071	pseudogene	Chr3:126272485-126274639 (+)
CAST/EiJ	ENSTCUG00005003915	pseudogene	Chr3:130027052-130029262 (+)
CBA/J	ENSMUSG00210004302	pseudogene	Chr3:129549973-129552154 (+)
DBA/2J	ENSMUSG00185027389	pseudogene	Chr3:130167299-130169478 (+)
FVB/NJ	ENSMUSG00205029529	pseudogene	Chr3:128486088-128488270 (+)
JF1/MsJ	ENSUMUG00000032592	pseudogene	Chr3:128892140-128894282 (+)
LP/J	ENSMUSG00230004458	pseudogene	Chr3:132141848-132144025 (+)
NOD/ShiLtJ	ENSMUSG00190001705	pseudogene	Chr3:130546645-130548828 (+)
NZO/HlLtJ	ENSMUSG00225005983	pseudogene	Chr3:134578876-134580977 (+)
PWK/PhJ	ENSLUMG00010015707	pseudogene	Chr3:128889506-128891659 (+)
SPRET/EiJ	ENSMSPG00010013163	pseudogene	Chr3:129933839-129935925 (+)
WSB/EiJ	ENSIUOG00005017391	pseudogene	Chr3:129693554-129695665 (+)

Homology

• Gene Tree
  Gm9403
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9403
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000106499 (Evidence)
• NCBI Gene
  668858

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106499	Ensembl Gene Model | MGI Sequence Detail	2181	C57BL/6J
transcript	ENSMUST00000196299	Ensembl | MGI Sequence Detail	2181	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31764	Chr3:132548857-132548890 (+)	717 bp