Gm5239 Pseudogene Detail

Summary

• Symbol
  Gm5239
• Name
  predicted pseudogene 5239

• Feature Type
  pseudogene
• IDs
  MGI:3648788
  NCBI Gene: 383341
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:35669636-35670000 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648788	pseudogene	Chr18:35669595-35670075 (+)
129S1/SvImJ	ENSMUSG00200045471	pseudogene	Chr18:32668393-32668757 (+)
A/J	ENSMUSG00195038080	pseudogene	Chr18:32835112-32835476 (+)
AKR/J	ENSMUSG00220017198	pseudogene	Chr18:32811429-32811793 (+)
BALB/cJ	ENSMUSG00180023123	pseudogene	Chr18:33284748-33285112 (+)
C3H/HeJ	ENSMUSG00175042818	pseudogene	Chr18:32792315-32792679 (+)
C57BL/6NJ	ENSMUSG00215032679	pseudogene	Chr18:32538496-32538860 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017036	protein coding gene	Chr11:92566479-92566827 (-)
CAST/EiJ	ENSTCUG00005023906	pseudogene	Chr18:32441898-32442262 (+)
CBA/J	ENSMUSG00210021901	pseudogene	Chr18:32826907-32827271 (+)
DBA/2J	ENSMUSG00185021075	pseudogene	Chr18:32761480-32761844 (+)
FVB/NJ	ENSMUSG00205035970	pseudogene	Chr18:32473295-32473659 (+)
JF1/MsJ	ENSUMUG00000046024	pseudogene	Chr18:32917163-32917527 (+)
LP/J	ENSMUSG00230049386	pseudogene	Chr18:34865205-34865569 (+)
NOD/ShiLtJ	ENSMUSG00190023710	pseudogene	Chr18:32546137-32546501 (+)
NZO/HlLtJ	ENSMUSG00225046970	pseudogene	Chr18:34770014-34770378 (+)
PWK/PhJ	ENSLUMG00010013461	pseudogene	Chr18:33062142-33062506 (+)
SPRET/EiJ	ENSMSPG00010022606	pseudogene	Chr18:33117575-33117897 (+)
WSB/EiJ	ENSIUOG00005008123	pseudogene	Chr18:32532885-32533249 (+)

Homology

• Gene Tree
  Gm5239
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000062742 (Evidence)
• NCBI Gene
  383341

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062742	Ensembl Gene Model | MGI Sequence Detail	365	C57BL/6J
transcript	ENSMUST00000081864	Ensembl | MGI Sequence Detail	365	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5239:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150522	Chr18:35669592-35669599 (+)	-40 bp