Gm4821 Pseudogene Detail

Summary

• Symbol
  Gm4821
• Name
  predicted gene 4821

• Feature Type
  pseudogene
• IDs
  MGI:3648787
  NCBI Gene: 219180
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:78698732-78699258 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 41.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648787	pseudogene	Chr14:78698442-78699291 (+)
129S1/SvImJ	ENSMUSG00200011118	pseudogene	Chr14:67150066-67150592 (+)
A/J	ENSMUSG00195004507	pseudogene	Chr14:67278808-67279334 (+)
AKR/J	ENSMUSG00220007404	pseudogene	Chr14:66655103-66655629 (+)
BALB/cJ	ENSMUSG00180024104	pseudogene	Chr14:66870573-66871099 (+)
C3H/HeJ	ENSMUSG00175030586	pseudogene	Chr14:68674982-68675508 (+)
C57BL/6NJ	ENSMUSG00215024832	pseudogene	Chr14:66864074-66864600 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032761	pseudogene	Chr14:68545288-68545747 (+)
CBA/J	ENSMUSG00210010342	pseudogene	Chr14:67291293-67291819 (+)
DBA/2J	ENSMUSG00185009209	pseudogene	Chr14:72446200-72446659 (+)
FVB/NJ	ENSMUSG00205025667	pseudogene	Chr14:66694596-66695122 (+)
JF1/MsJ	ENSUMUG00000019296	pseudogene	Chr14:83598441-83598900 (+)
LP/J	ENSMUSG00230002691	pseudogene	Chr14:84486917-84487443 (+)
NOD/ShiLtJ	ENSMUSG00190010924	pseudogene	Chr14:67110403-67110929 (+)
NZO/HlLtJ	ENSMUSG00225025227	pseudogene	Chr14:74768177-74768703 (+)
PWK/PhJ	ENSLUMG00010010926	pseudogene	Chr14:66468543-66469069 (+)
SPRET/EiJ	ENSMSPG00010029502	pseudogene	Chr14:70152721-70152791 (+)
WSB/EiJ	ENSIUOG00005023398	pseudogene	Chr14:66453436-66453962 (+)

Homology

• Gene Tree
  Gm4821
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm4821
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115450 (Evidence)
• NCBI Gene
  219180

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115450	Ensembl Gene Model | MGI Sequence Detail	527	C57BL/6J
transcript	ENSMUST00000227356	Ensembl | MGI Sequence Detail	527	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4821:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126768	Chr14:78698519-78698545 (+)	-200 bp