Gm4880 Pseudogene Detail

Summary

• Symbol
  Gm4880
• Name
  predicted pseudogene 4880

• Feature Type
  pseudogene
• IDs
  MGI:3648786
  NCBI Gene: 232930
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:18243786-18245555 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 9.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648786	pseudogene	Chr7:18242835-18245664 (-)
129S1/SvImJ	ENSMUSG00200046634	pseudogene	Chr7:11398505-11400498 (-)
A/J	ENSMUSG00195053534	pseudogene	Chr7:11882152-11883921 (-)
AKR/J	ENSMUSG00220033796	pseudogene	Chr7:10215129-10216898 (-)
BALB/cJ	ENSMUSG00180054135	pseudogene	Chr7:11738541-11740310 (-)
C3H/HeJ	ENSMUSG00175053274	pseudogene	Chr7:12314607-12316600 (-)
C57BL/6NJ	ENSMUSG00215054957	pseudogene	Chr7:11965670-11967439 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052823	pseudogene	Chr7:12244591-12246592 (-)
CBA/J	ENSMUSG00210053617	pseudogene	Chr7:11541362-11543355 (-)
DBA/2J	ENSMUSG00185055719	pseudogene	Chr7:15024033-15025802 (-)
FVB/NJ	ENSMUSG00205052632	pseudogene	Chr7:11976966-11978735 (-)
JF1/MsJ	ENSUMUG00000044482	pseudogene	Chr7:18298883-18300876 (-)
LP/J	ENSMUSG00230046564	pseudogene	Chr7:19273935-19275928 (-)
NOD/ShiLtJ	ENSMUSG00190051773	pseudogene	Chr7:8169428-8171197 (-)
NZO/HlLtJ	ENSMUSG00225054170	pseudogene	Chr7:16569155-16570924 (-)
PWK/PhJ	ENSLUMG00010050230	pseudogene	Chr7:1185801-1187794 (-)
SPRET/EiJ	ENSMSPG00010051809	pseudogene	Chr7:11278407-11280407 (-)
WSB/EiJ	ENSIUOG00005009621	pseudogene	Chr7:20315146-20317134 (+)

Homology

• Gene Tree
  Gm4880
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109355 (Evidence)
• NCBI Gene
  232930

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109355	Ensembl Gene Model | MGI Sequence Detail	1770	C57BL/6J
transcript	ENSMUST00000207645	Ensembl | MGI Sequence Detail	1696	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;