Gm7788 Pseudogene Detail

Summary

• Symbol
  Gm7788
• Name
  predicted gene 7788

• Feature Type
  pseudogene
• IDs
  MGI:3648684
  NCBI Gene: 665797
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:23350653-23350875 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 12.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648684	pseudogene	Chr18:23349726-23350875 (+)
129S1/SvImJ	ENSMUSG00200016477	pseudogene	Chr18:20352796-20353738 (+)
A/J	ENSMUSG00195002426	pseudogene	Chr18:20499073-20500015 (+)
AKR/J	ENSMUSG00220011514	pseudogene	Chr18:20507606-20508548 (+)
BALB/cJ	ENSMUSG00180003582	pseudogene	Chr18:20960704-20961646 (+)
C3H/HeJ	ENSMUSG00175024428	pseudogene	Chr18:20456213-20457155 (+)
C57BL/6NJ	ENSMUSG00215023717	pseudogene	Chr18:20205922-20206864 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016211	pseudogene	Chr18:20225004-20225946 (+)
CBA/J	ENSMUSG00210016167	pseudogene	Chr18:20510351-20511293 (+)
DBA/2J	ENSMUSG00185022749	pseudogene	Chr18:20455506-20456448 (+)
FVB/NJ	ENSMUSG00205022671	pseudogene	Chr18:20181921-20182863 (+)
JF1/MsJ	ENSUMUG00000027518	pseudogene	Chr18:20549037-20549987 (+)
LP/J	ENSMUSG00230006303	pseudogene	Chr18:22548765-22549707 (+)
NOD/ShiLtJ	ENSMUSG00190006997	pseudogene	Chr18:20270065-20271007 (+)
NZO/HlLtJ	ENSMUSG00225025733	pseudogene	Chr18:22479478-22480420 (+)
PWK/PhJ	ENSLUMG00010003627	pseudogene	Chr18:20731484-20732432 (+)
SPRET/EiJ	ENSMSPG00010022538	pseudogene	Chr18:20670047-20670990 (+)
WSB/EiJ	ENSIUOG00005002867	pseudogene	Chr18:20277569-20278511 (+)

Homology

• Gene Tree
  Gm7788
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000117475 (Evidence)
• NCBI Gene
  665797

Representative Sequences			Length	Strain/Species
genomic	665797	NCBI Gene Model | MGI Sequence Detail	223	C57BL/6J
transcript	NR_110491	RefSeq | MGI Sequence Detail	223	C57BL/6

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;