Gm5886 Pseudogene Detail

Summary

• Symbol
  Gm5886
• Name
  predicted gene 5886

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648674
  NCBI Gene: 545886
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:133742259-133744366 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 64.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  285 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648674	pseudogene	Chr6:133740961-133744371 (-)
129S1/SvImJ	ENSMUSG00200048232	pseudogene	Chr6:131245975-131249389 (-)
A/J	ENSMUSG00195033527	pseudogene	Chr6:130106735-130110147 (-)
AKR/J	ENSMUSG00220043129	pseudogene	Chr6:128185442-128188854 (-)
BALB/cJ	ENSMUSG00180038873	pseudogene	Chr6:130174433-130177845 (-)
C3H/HeJ	ENSMUSG00175040802	pseudogene	Chr6:130127139-130130551 (-)
C57BL/6NJ	ENSMUSG00215031414	pseudogene	Chr6:130364305-130367720 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042078	pseudogene	Chr6:131034951-131038363 (-)
CBA/J	ENSMUSG00210016898	pseudogene	Chr6:130145723-130149135 (-)
DBA/2J	ENSMUSG00185046188	pseudogene	Chr6:130841894-130845306 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000043733	pseudogene	Chr6:129582653-129586065 (-)
LP/J	ENSMUSG00230010150	pseudogene	Chr6:132040573-132043985 (-)
NOD/ShiLtJ	ENSMUSG00190040931	pseudogene	Chr6:130701150-130704562 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047103	pseudogene	Chr6:130944234-130947650 (-)

Homology

• Gene Tree
  Gm5886
  

Expression

• Assay Results
  597
• cDNA Data
  164

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000108106 (Evidence)
• NCBI Gene
  545886

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108106	Ensembl Gene Model | MGI Sequence Detail	2108	C57BL/6J
transcript	ENSMUST00000203957	Ensembl | MGI Sequence Detail	522	Not Applicable
polypeptide	NP_001171123	RefSeq | MGI Sequence Detail	165	FVB/N

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR026086 Proline-rich protein

Molecular
Reagents

• All nucleic 164

  cDNA 164

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5886:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63707	Chr6:133744372-133744377 (-)	-9 bp