Gm5885 Pseudogene Detail

Summary

• Symbol
  Gm5885
• Name
  predicted gene 5885

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648672
  NCBI Gene: 545884
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:133506185-133508453 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 64.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648672	pseudogene	Chr6:133506152-133509725 (+)
129S1/SvImJ	ENSMUSG00200043567	protein coding gene	Chr6:130772227-130775805 (+)
129S1/SvImJ	ENSMUSG00200046969	pseudogene	Chr6:131011184-131014757 (+)
A/J	ENSMUSG00195034230	pseudogene	Chr6:129691505-129695071 (+)
A/J	ENSMUSG00195031039	protein coding gene	Chr6:129336455-129340033 (+)
AKR/J	ENSMUSG00220039044	pseudogene	Chr6:127904702-127908269 (+)
AKR/J	ENSMUSG00220032390	protein coding gene	Chr6:127873957-127877534 (+)
BALB/cJ	ENSMUSG00180036352	protein coding gene	Chr6:129404021-129407599 (+)
BALB/cJ	ENSMUSG00180038356	pseudogene	Chr6:129758999-129762565 (+)
C3H/HeJ	ENSMUSG00175041065	pseudogene	Chr6:129708473-129712039 (+)
C3H/HeJ	ENSMUSG00175033112	protein coding gene	Chr6:129353442-129357020 (+)
C57BL/6NJ	ENSMUSG00215033490	pseudogene	Chr6:130125621-130129194 (+)
C57BL/6NJ	ENSMUSG00215014902	protein coding gene	Chr6:129888558-129892134 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036984	pseudogene	Chr6:130838138-130841686 (+)
CAST/EiJ	ENSTCUG00005042828	pseudogene	Chr6:130572740-130576308 (+)
CBA/J	ENSMUSG00210017110	pseudogene	Chr6:129727857-129731423 (+)
CBA/J	ENSMUSG00210015845	protein coding gene	Chr6:129372824-129376402 (+)
DBA/2J	ENSMUSG00185044930	pseudogene	Chr6:130426493-130430059 (+)
DBA/2J	ENSMUSG00185039840	protein coding gene	Chr6:130071465-130075043 (+)
FVB/NJ	ENSMUSG00205036631	pseudogene	Chr6:129188907-129192480 (+)
FVB/NJ	ENSMUSG00205033559	protein coding gene	Chr6:128951869-128955445 (+)
JF1/MsJ	ENSUMUG00000044885	pseudogene	Chr6:129167135-129170701 (+)
LP/J	ENSMUSG00230046206	pseudogene	Chr6:131270206-131273779 (+)
LP/J	ENSMUSG00230044421	pseudogene	Chr6:131625162-131628728 (+)
NOD/ShiLtJ	ENSMUSG00190032379	protein coding gene	Chr6:130218369-130221947 (+)
NOD/ShiLtJ	ENSMUSG00190044935	pseudogene	Chr6:130454770-130458343 (+)
NZO/HlLtJ	ENSMUSG00225007053	protein coding gene	Chr6:134426613-134430188 (+)
NZO/HlLtJ	ENSMUSG00225007566	pseudogene	Chr6:134657349-134660918 (+)
PWK/PhJ	ENSLUMG00010045586	pseudogene	Chr6:128243049-128246617 (+)
SPRET/EiJ	ENSMSPG00010038214	pseudogene	Chr6:131617390-131620968 (+)
SPRET/EiJ	ENSMSPG00010036175	pseudogene	Chr6:132006878-132010456 (+)
WSB/EiJ	ENSIUOG00005045960	pseudogene	Chr6:130709532-130713105 (+)

Homology

• Gene Tree
  Gm5885
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000095412 (Evidence)
• NCBI Gene
  545884

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095412	Ensembl Gene Model | MGI Sequence Detail	2269	C57BL/6J
transcript	ENSMUST00000203357	Ensembl | MGI Sequence Detail	528	Not Applicable
polypeptide	NP_001171969	RefSeq | MGI Sequence Detail	174	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;