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Atp6ap1l Gene Detail
Summary
  • Symbol
    Atp6ap1l
  • Name
    ATPase, H+ transporting, lysosomal accessory protein 1-like
  • Synonyms
    EG435376
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648665
    NCBI Gene: 435376
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:91031558-91053478 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 46.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    863 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648665
 protein coding gene Chr13:91031552-91053478 (-)
129S1/SvImJ ENSMUSG00200007952
 protein coding gene Chr13:85524486-85546393 (-)
A/J ENSMUSG00195023665
 protein coding gene Chr13:86026337-86048247 (-)
AKR/J ENSMUSG00220013482
 protein coding gene Chr13:84533291-84555207 (-)
BALB/cJ ENSMUSG00180015170
 protein coding gene Chr13:86552337-86574251 (-)
C3H/HeJ ENSMUSG00175022073
 protein coding gene Chr13:86743614-86765531 (-)
C57BL/6NJ ENSMUSG00215002929
 protein coding gene Chr13:86627970-86649888 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018759
 protein coding gene Chr13:84711979-84737811 (-)
CAST/EiJ ENSTCUG00005009166
 protein coding gene Chr13:85851582-85874352 (-)
CBA/J ENSMUSG00210024134
 protein coding gene Chr13:86023475-86045382 (-)
DBA/2J ENSMUSG00185010005
 protein coding gene Chr13:89709412-89731324 (-)
FVB/NJ ENSMUSG00205008340
 protein coding gene Chr13:85500038-85521967 (-)
JF1/MsJ ENSUMUG00000015726
 protein coding gene Chr13:89426625-89449421 (-)
LP/J ENSMUSG00230004249
 protein coding gene Chr13:99727617-99749528 (-)
NOD/ShiLtJ ENSMUSG00190017477
 protein coding gene Chr13:86405410-86429096 (-)
NZO/HlLtJ ENSMUSG00225032384
 protein coding gene Chr13:92257936-92279838 (-)
PWK/PhJ ENSLUMG00010011433
 protein coding gene Chr13:85545483-85568380 (-)
SPRET/EiJ ENSMSPG00010006365
 protein coding gene Chr13:86748876-86770502 (-)
WSB/EiJ ENSIUOG00005030516
 protein coding gene Chr13:85433768-85455703 (-)



Homology
more
  • Human Ortholog
    ATP6AP1L, ATPase H+ transporting accessory protein 1 like (pseudogene)
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATP6AP1L, ATPase H+ transporting accessory protein 1 like (pseudogene)
  • Synonyms
    ATP6AP1LP
  • Links
    NCBI Gene ID: 92270

  • Chr Location
    5q14.2; chr5:82278650-82318806 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 435376 NCBI Gene Model | MGI Sequence Detail 21921 C57BL/6J ±  kb
transcript NM_001145879 RefSeq | MGI Sequence Detail 1176 C57BL/6  
polypeptide NP_001139351 RefSeq | MGI Sequence Detail 336 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR008388 V0 complex accessory subunit Ac45
    IPR046755 V-type proton ATPase subunit S1, luminal domain
    IPR046756 V-type proton ATPase subunit S1/VOA1, transmembrane domain
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 19
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory