Gm5507 Pseudogene Detail

Summary

• Symbol
  Gm5507
• Name
  predicted gene 5507

• Feature Type
  pseudogene
• IDs
  MGI:3648656
  NCBI Gene: 433184
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:54117393-54118400 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 29.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648656	pseudogene	Chr18:54117375-54118599 (+)
129S1/SvImJ	ENSMUSG00200034063	pseudogene	Chr18:51160132-51161139 (+)
A/J	ENSMUSG00195005413	pseudogene	Chr18:51310894-51311901 (+)
AKR/J	ENSMUSG00220016354	pseudogene	Chr18:51280966-51281973 (+)
BALB/cJ	ENSMUSG00180012596	pseudogene	Chr18:51866969-51867976 (+)
C3H/HeJ	ENSMUSG00175037013	pseudogene	Chr18:51481302-51482309 (+)
C57BL/6NJ	ENSMUSG00215039642	pseudogene	Chr18:50845332-50846339 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027567	pseudogene	Chr18:50698203-50699210 (+)
CBA/J	ENSMUSG00210032861	pseudogene	Chr18:51417097-51418104 (+)
DBA/2J	ENSMUSG00185016031	pseudogene	Chr18:51337163-51338170 (+)
FVB/NJ	ENSMUSG00205018163	pseudogene	Chr18:50780607-50781614 (+)
JF1/MsJ	ENSUMUG00000035398	pseudogene	Chr18:51255307-51256314 (+)
LP/J	ENSMUSG00230011654	pseudogene	Chr18:53339400-53340407 (+)
NOD/ShiLtJ	ENSMUSG00190032707	pseudogene	Chr18:51044099-51045106 (+)
NZO/HlLtJ	ENSMUSG00225035448	pseudogene	Chr18:53233922-53234929 (+)
PWK/PhJ	ENSLUMG00010008661	pseudogene	Chr18:51409461-51410468 (+)
SPRET/EiJ	ENSMSPG00010018969	pseudogene	Chr18:51758639-51759645 (+)
WSB/EiJ	ENSIUOG00005009737	pseudogene	Chr18:50970699-50971706 (+)

Homology

• Gene Tree
  Gm5507
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5507
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000069376 (Evidence)
• NCBI Gene
  433184

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069376	Ensembl Gene Model | MGI Sequence Detail	1008	C57BL/6J
transcript	ENSMUST00000091897	Ensembl | MGI Sequence Detail	1008	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67