Rpl29-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl29-ps2
• Name
  ribosomal protein L29, pseudogene 2
• Synonyms
  Gm5443

• Feature Type
  pseudogene
• IDs
  MGI:3648624
  NCBI Gene: 432721
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:4664181-4664658 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 2.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648624	pseudogene	Chr13:4664126-4664792 (+)
129S1/SvImJ	ENSMUSG00200006673	pseudogene	Chr13:1835554-1841145 (+)
A/J	ENSMUSG00195012698	pseudogene	Chr13:1243765-1249356 (+)
AKR/J	ENSMUSG00220013602	pseudogene	Chr13:1529969-1535648 (+)
BALB/cJ	ENSMUSG00180009647	pseudogene	Chr13:1655933-1661525 (+)
C3H/HeJ	ENSMUSG00175008822	pseudogene	Chr13:1681386-1687077 (+)
C57BL/6NJ	ENSMUSG00215025645	pseudogene	Chr13:1901262-1906956 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025541	pseudogene	Chr13:1915334-1920963 (+)
CBA/J	ENSMUSG00210022864	pseudogene	Chr13:1220061-1225751 (+)
DBA/2J	ENSMUSG00185025716	pseudogene	Chr13:1907820-1913519 (+)
FVB/NJ	ENSMUSG00205028351	pseudogene	Chr13:1668774-1674365 (+)
JF1/MsJ	ENSUMUG00000011133	pseudogene	Chr13:1907383-1913043 (+)
LP/J	ENSMUSG00230007434	pseudogene	Chr13:11380201-11385861 (+)
NOD/ShiLtJ	ENSMUSG00190014043	pseudogene	Chr13:1367123-1372790 (+)
NZO/HlLtJ	ENSMUSG00225034557	pseudogene	Chr13:5267339-5272995 (+)
PWK/PhJ	ENSLUMG00010017353	pseudogene	Chr13:1298360-1303987 (+)
SPRET/EiJ	ENSMSPG00010027016	pseudogene	Chr13:1340178-1345985 (+)
WSB/EiJ	ENSIUOG00005022162	pseudogene	Chr13:1262004-1267693 (+)

Homology

• Gene Tree
  Rpl29-ps2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000094772 (Evidence)
• NCBI Gene
  432721

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094772	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000086508	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:375386 Oleinik N, et al., Mitochondrial protein import is regulated by p17/PERMIT to mediate lipid metabolism and cellular stress. Sci Adv. 2019 Sep;5(9):eaax1978

TSS for Rpl29-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118228	Chr13:4664125-4664126 (+)	-55 bp