Gm6743 Pseudogene Detail

Summary

• Symbol
  Gm6743
• Name
  predicted pseudogene 6743

• Feature Type
  pseudogene
• IDs
  MGI:3648616
  NCBI Gene: 101056233
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:60874116-60875181 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648616	pseudogene	ChrX:60874115-60877995 (+)
129S1/SvImJ	ENSMUSG00200016220	pseudogene	ChrX:43129516-43130581 (+)
A/J	ENSMUSG00195009940	pseudogene	ChrX:46664091-46665156 (+)
AKR/J	ENSMUSG00220024501	pseudogene	ChrX:42220816-42221881 (+)
BALB/cJ	ENSMUSG00180007232	pseudogene	ChrX:43285230-43286295 (+)
C3H/HeJ	ENSMUSG00175009331	pseudogene	ChrX:46845344-46846409 (+)
C57BL/6NJ	ENSMUSG00215008678	pseudogene	ChrX:43436081-43437146 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009614	pseudogene	Chr11:57142751-57262895 (-)
CAST/EiJ	ENSTCUG00005020065	pseudogene	ChrX:45023383-45024474 (+)
CBA/J	ENSMUSG00210018874	pseudogene	ChrX:43636522-43637587 (+)
DBA/2J	ENSMUSG00185036120	pseudogene	ChrX:55919214-55920279 (+)
FVB/NJ	ENSMUSG00205009192	pseudogene	ChrX:43244552-43245617 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230019930	pseudogene	ChrX:62476587-62477652 (+)
NOD/ShiLtJ	ENSMUSG00190013189	pseudogene	ChrX:42934591-42935656 (+)
NZO/HlLtJ	ENSMUSG00225032533	pseudogene	ChrX:67722067-67723132 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010004716	pseudogene	ChrX:45545060-45546146 (+)
WSB/EiJ	ENSIUOG00005012105	pseudogene	ChrX:43976401-43977466 (+)

Homology

• Gene Tree
  Gm6743
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082467 (Evidence)
• NCBI Gene
  101056233

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082467	Ensembl Gene Model | MGI Sequence Detail	1066	C57BL/6J
transcript	ENSMUST00000117345	Ensembl | MGI Sequence Detail	1066	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm6743:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161110	ChrX:60873803-60873816 (+)	-306 bp