Rplp0-ps1 Pseudogene Detail

Summary

• Symbol
  Rplp0-ps1
• Name
  ribosomal protein lateral stalk subunit P0, pseudogene 1
• Synonyms
  Gm9093

• Feature Type
  pseudogene
• IDs
  MGI:3648599
  NCBI Gene: 668300
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:93185448-93186380 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648599	pseudogene	Chr3:93185377-93186460 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012280	pseudogene	Chr3:93767959-93769138 (+)
A/J	MGP_AJ_G0012274	pseudogene	Chr3:90865102-90865923 (+)
AKR/J	MGP_AKRJ_G0012241	pseudogene	Chr3:92950418-92951243 (+)
BALB/cJ	MGP_BALBcJ_G0012257	pseudogene	Chr3:90612708-90613533 (+)
C3H/HeJ	MGP_C3HHeJ_G0012125	pseudogene	Chr3:93175114-93175935 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012569	pseudogene	Chr3:97340449-97341381 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012101	pseudogene	Chr3:100719590-100720411 (+)
DBA/2J	MGP_DBA2J_G0012158	pseudogene	Chr3:90157059-90157884 (+)
FVB/NJ	MGP_FVBNJ_G0012160	pseudogene	Chr3:88286108-88286933 (+)
LP/J	MGP_LPJ_G0012228	pseudogene	Chr3:95003245-95004066 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012163	pseudogene	Chr3:106982596-106983421 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012574	pseudogene	Chr3:92686725-92687550 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rplp0-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rplp0-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000081640 (Evidence)
• NCBI Gene
  668300

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081640	Ensembl Gene Model | MGI Sequence Detail	933	C57BL/6J
transcript	ENSMUST00000122125	Ensembl | MGI Sequence Detail	933	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rplp0-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30322	Chr3:93184851-93184867 (+)	-589 bp
Tssr30323	Chr3:93184890-93184898 (+)	-554 bp
Tssr958	Chr3:93184914-93184934 (+)	-524 bp
Tssr30324	Chr3:93184946-93184959 (+)	-495 bp
Tssr30325	Chr3:93184970-93184986 (+)	-470 bp
Tssr30326	Chr3:93185371-93185379 (+)	-73 bp