Gm5236 Pseudogene Detail

Summary

• Symbol
  Gm5236
• Name
  predicted gene 5236

• Feature Type
  pseudogene
• IDs
  MGI:3648556
  NCBI Gene: 383325
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:47862787-47863419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 25.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648556	pseudogene	Chr18:47862787-47864179 (+)
129S1/SvImJ	ENSMUSG00200030979	pseudogene	Chr18:44885117-44886462 (+)
A/J	ENSMUSG00195025290	pseudogene	Chr18:45063707-45065052 (+)
AKR/J	ENSMUSG00220021717	pseudogene	Chr18:45013468-45014813 (+)
BALB/cJ	ENSMUSG00180007950	pseudogene	Chr18:45552251-45553597 (+)
C3H/HeJ	ENSMUSG00175011078	pseudogene	Chr18:45064568-45065913 (+)
C57BL/6NJ	ENSMUSG00215009632	pseudogene	Chr18:44748728-44750073 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014054	pseudogene	Chr18:44468488-44469842 (+)
CBA/J	ENSMUSG00210022549	pseudogene	Chr18:45116304-45117649 (+)
DBA/2J	ENSMUSG00185028774	pseudogene	Chr18:45016548-45017893 (+)
FVB/NJ	ENSMUSG00205015434	pseudogene	Chr18:44497512-44498857 (+)
JF1/MsJ	ENSUMUG00000031663	pseudogene	Chr18:45020854-45022189 (+)
LP/J	ENSMUSG00230029210	pseudogene	Chr18:47096434-47097779 (+)
NOD/ShiLtJ	ENSMUSG00190028326	pseudogene	Chr18:44798159-44799504 (+)
NZO/HlLtJ	ENSMUSG00225027613	pseudogene	Chr18:46979865-46981210 (+)
PWK/PhJ	ENSLUMG00010022347	pseudogene	Chr18:45145613-45146948 (+)
SPRET/EiJ	ENSMSPG00010013515	pseudogene	Chr18:45314098-45315454 (+)
WSB/EiJ	ENSIUOG00005009780	pseudogene	Chr18:44722327-44723672 (+)

Homology

• Gene Tree
  Gm5236
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5236
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117765 (Evidence)
• NCBI Gene
  383325

Representative Sequences			Length	Strain/Species
genomic	383325	NCBI Gene Model | MGI Sequence Detail	633	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67