Gm6397 Pseudogene Detail

Summary

• Symbol
  Gm6397
• Name
  predicted gene 6397

• Feature Type
  pseudogene
• IDs
  MGI:3648542
  NCBI Gene: 623138
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:143558968-143560036 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 62.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648542	pseudogene	Chr1:143558917-143560254 (+)
129S1/SvImJ	ENSMUSG00200008594	pseudogene	Chr1:141041529-141042597 (+)
A/J	ENSMUSG00195017686	pseudogene	Chr1:140345455-140346523 (+)
AKR/J	ENSMUSG00220003571	pseudogene	Chr1:140109407-140110475 (+)
BALB/cJ	ENSMUSG00180011958	pseudogene	Chr1:140563299-140564367 (+)
C3H/HeJ	ENSMUSG00175006635	pseudogene	Chr1:140544803-140545871 (+)
C57BL/6NJ	ENSMUSG00215020109	pseudogene	Chr1:140492667-140493735 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002301	pseudogene	Chr1:5272730-5276054 (-)
CAST/EiJ	ENSTCUG00005044865	pseudogene	Chr12:111008503-111009571 (+)
CAST/EiJ	ENSTCUG00005019769	pseudogene	Chr4:83280774-83281842 (+)
CAST/EiJ	ENSTCUG00005031374	pseudogene	Chr3:135790331-135791399 (-)
CAST/EiJ	ENSTCUG00005030614	pseudogene	Chr10:53799768-53800836 (-)
CAST/EiJ	ENSTCUG00005013271	pseudogene	Chr1:139335412-139336478 (+)
CBA/J	ENSMUSG00210014370	pseudogene	Chr1:140506814-140507882 (+)
DBA/2J	ENSMUSG00185007323	pseudogene	Chr1:144811922-144812990 (+)
FVB/NJ	ENSMUSG00205002559	pseudogene	Chr1:139721622-139722690 (+)
JF1/MsJ	ENSUMUG00000013060	pseudogene	Chr1:144133833-144134881 (+)
LP/J	ENSMUSG00230000494	pseudogene	Chr1:144325394-144326462 (+)
NOD/ShiLtJ	ENSMUSG00190002900	pseudogene	Chr1:140329990-140331058 (+)
NZO/HlLtJ	ENSMUSG00225000119	pseudogene	Chr1:148100213-148101281 (+)
PWK/PhJ	ENSLUMG00010002177	pseudogene	Chr1:139451209-139452257 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005029957	pseudogene	Chr1:139858293-139859338 (+)

Homology

• Gene Tree
  Gm6397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6397
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000089640 (Evidence)
• NCBI Gene
  623138

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089640	Ensembl Gene Model | MGI Sequence Detail	1069	C57BL/6J
transcript	ENSMUST00000161973	Ensembl | MGI Sequence Detail	1069	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:97904 Makeyev AV, et al., HnRNP A3 genes and pseudogenes in the vertebrate genomes. J Exp Zoolog A Comp Exp Biol. 2005 Apr 1;303(4):259-71

TSS for Gm6397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9192	Chr1:143557662-143557671 (+)	-1,301 bp