Gm4832 Pseudogene Detail

Summary

• Symbol
  Gm4832
• Name
  predicted gene 4832

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648524
  NCBI Gene: 225058
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:88438143-88438541 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 57.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648524	pseudogene	Chr17:88432940-88438611 (+)
129S1/SvImJ	ENSMUSG00200023153	pseudogene	Chr17:83845819-83851417 (+)
A/J	ENSMUSG00195030037	pseudogene	Chr17:85244586-85250187 (+)
AKR/J	ENSMUSG00220016561	pseudogene	Chr17:84176575-84182197 (+)
BALB/cJ	ENSMUSG00180026877	pseudogene	Chr17:84916668-84922269 (+)
C3H/HeJ	ENSMUSG00175007077	pseudogene	Chr17:84182522-84188123 (+)
C57BL/6NJ	ENSMUSG00215020563	pseudogene	Chr17:83880623-83886224 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036846	pseudogene	Chr17:83706322-83712030 (+)
CAST/EiJ	ENSTCUG00005011817	pseudogene	Chr17:84727938-84733536 (+)
CBA/J	ENSMUSG00210022388	pseudogene	Chr17:84041134-84046735 (+)
DBA/2J	ENSMUSG00185020381	pseudogene	Chr17:86840216-86845817 (+)
FVB/NJ	ENSMUSG00205006247	pseudogene	Chr17:84658422-84664025 (+)
JF1/MsJ	ENSUMUG00000018586	pseudogene	Chr17:86595127-86600646 (+)
LP/J	ENSMUSG00230010621	pseudogene	Chr17:87882644-87888245 (+)
NOD/ShiLtJ	ENSMUSG00190009767	pseudogene	Chr17:83921443-83927042 (+)
NZO/HlLtJ	ENSMUSG00225030919	pseudogene	Chr17:90124582-90130192 (+)
PWK/PhJ	ENSLUMG00010032085	pseudogene	Chr17:83807337-83812904 (+)
SPRET/EiJ	ENSMSPG00010020850	pseudogene	Chr17:84390946-84396563 (+)
WSB/EiJ	ENSIUOG00005022024	pseudogene	Chr17:84844766-84850365 (+)

Homology

• Gene Tree
  Gm4832
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000058869 (Evidence)
• NCBI Gene
  225058

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058869	Ensembl Gene Model | MGI Sequence Detail	399	C57BL/6J
transcript	ENSMUST00000182679	Ensembl | MGI Sequence Detail	399	Not Applicable
polypeptide	NP_001177285	RefSeq | MGI Sequence Detail	133	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR053709 Eukaryotic Ribosomal Protein eS24
  IPR012678 Ribosomal protein uL23/eL15/eS24 core domain superfamily
  IPR001976 Small ribosomal subunit protein eS24

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Gm4832:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146226	Chr17:88438104-88438107 (+)	-37 bp