Rpl27a-ps4 Pseudogene Detail

Summary

• Symbol
  Rpl27a-ps4
• Name
  ribosomal protein L27A, pseudogene 4
• Synonyms
  Gm5453

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648523
  NCBI Gene: 115488170
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:99040732-99041178 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 52.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648523	pseudogene	Chr13:99035048-99041241 (+)
129S1/SvImJ	ENSMUSG00200009092	pseudogene	Chr13:93610503-93610949 (+)
A/J	ENSMUSG00195000167	pseudogene	Chr1:28147912-28148357 (-)
A/J	ENSMUSG00195030885	pseudogene	Chr13:94099335-94099781 (+)
AKR/J	ENSMUSG00220030326	pseudogene	Chr13:92586575-92587021 (+)
BALB/cJ	ENSMUSG00180039444	pseudogene	Chr13:94639422-94639868 (+)
C3H/HeJ	ENSMUSG00175017589	pseudogene	Chr13:94806278-94806724 (+)
C3H/HeJ	ENSMUSG00175000813	pseudogene	Chr1:28147943-28148388 (-)
C57BL/6NJ	ENSMUSG00215035366	pseudogene	Chr13:94691722-94692168 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210011902	pseudogene	Chr13:94127120-94127566 (+)
DBA/2J	ENSMUSG00185020706	pseudogene	Chr13:97787910-97788356 (+)
DBA/2J	ENSMUSG00185017024	pseudogene	Chr1:29067190-29067635 (-)
FVB/NJ	ENSMUSG00205037427	pseudogene	Chr13:93587846-93588292 (+)
FVB/NJ	ENSMUSG00205007340	pseudogene	Chr1:28139171-28139616 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230037521	pseudogene	Chr13:107795713-107796159 (+)
NOD/ShiLtJ	ENSMUSG00190045467	pseudogene	Chr13:94469525-94469971 (+)
NZO/HlLtJ	ENSMUSG00225033824	pseudogene	Chr13:100319407-100319853 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005035205	pseudogene	Chr13:93474198-93474644 (+)

Homology

• Gene Tree
  Rpl27a-ps4
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000062461 (Evidence)
• NCBI Gene
  115488170

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062461	Ensembl Gene Model | MGI Sequence Detail	447	C57BL/6J
transcript	ENSMUST00000080866	Ensembl | MGI Sequence Detail	447	Not Applicable
polypeptide	XP_036014175	RefSeq | MGI Sequence Detail	148	C57BL/6J

Other
Accession IDs

MGI:6362749

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Rpl27a-ps4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120817	Chr13:99040703-99040707 (+)	-27 bp