Gm6235 Pseudogene Detail

Summary

• Symbol
  Gm6235
• Name
  predicted gene 6235

• Feature Type
  pseudogene
• IDs
  MGI:3648491
  NCBI Gene: 621501
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:3446814-3447222 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 2.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648491	pseudogene	Chr18:3446654-3447503 (+)
129S1/SvImJ	ENSMUSG00200025306	pseudogene	Chr18:361570-361978 (+)
A/J	ENSMUSG00195008784	pseudogene	Chr18:556442-556850 (+)
AKR/J	ENSMUSG00220019713	pseudogene	Chr18:544217-544625 (+)
BALB/cJ	ENSMUSG00180005443	pseudogene	Chr18:1020926-1021335 (+)
C3H/HeJ	ENSMUSG00175007919	pseudogene	Chr18:556562-556970 (+)
C57BL/6NJ	ENSMUSG00215026093	pseudogene	Chr18:275432-275840 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017471	pseudogene	Chr18:567748-568181 (+)
CBA/J	ENSMUSG00210021990	pseudogene	Chr18:563386-563794 (+)
DBA/2J	ENSMUSG00185030305	pseudogene	Chr18:550126-550534 (+)
FVB/NJ	ENSMUSG00205034208	pseudogene	Chr18:308436-308845 (+)
JF1/MsJ	ENSUMUG00000041403	pseudogene	Chr18:602697-603106 (+)
LP/J	ENSMUSG00230028698	pseudogene	Chr18:2611004-2611412 (+)
NOD/ShiLtJ	ENSMUSG00190010593	pseudogene	Chr18:308914-309322 (+)
NZO/HlLtJ	ENSMUSG00225034896	pseudogene	Chr18:2539704-2540112 (+)
PWK/PhJ	ENSLUMG00010009890	pseudogene	Chr18:777723-778128 (+)
SPRET/EiJ	ENSMSPG00010011766	pseudogene	Chr18:290832-291247 (+)
WSB/EiJ	ENSIUOG00005028275	pseudogene	Chr18:462147-462555 (+)

Homology

• Gene Tree
  Gm6235
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117370 (Evidence)
• NCBI Gene
  621501

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117370	Ensembl Gene Model | MGI Sequence Detail	409	C57BL/6J
transcript	ENSMUST00000235096	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6235:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149893	Chr18:3446896-3446906 (+)	87 bp
Tssr149894	Chr18:3447084-3447129 (+)	293 bp