Gm8290 Pseudogene Detail

Summary

• Symbol
  Gm8290
• Name
  predicted gene 8290

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648461
  NCBI Gene: 666790
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:81844213-81844689 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648461	pseudogene	Chr10:81840333-81845916 (+)
129S1/SvImJ	ENSMUSG00200050773	pseudogene	Chr10:78260944-78261420 (+)
A/J	ENSMUSG00195050642	pseudogene	Chr10:78707297-78707773 (+)
AKR/J	ENSMUSG00220049948	pseudogene	Chr10:78304961-78305437 (+)
BALB/cJ	ENSMUSG00180053439	pseudogene	Chr10:78717706-78718182 (+)
C3H/HeJ	ENSMUSG00175052819	pseudogene	Chr10:78588441-78588917 (+)
C57BL/6NJ	ENSMUSG00215053159	pseudogene	Chr10:78330383-78330859 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052136	pseudogene	Chr10:78080241-78080717 (+)
CBA/J	ENSMUSG00210050294	pseudogene	Chr10:78444487-78444963 (+)
DBA/2J	ENSMUSG00185054020	pseudogene	Chr10:78654030-78654506 (+)
FVB/NJ	ENSMUSG00205052162	pseudogene	Chr10:78371484-78371960 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230018786	pseudogene	Chr10:80556491-80556967 (+)
NOD/ShiLtJ	ENSMUSG00190052702	pseudogene	Chr10:78700539-78701015 (+)
NZO/HlLtJ	ENSMUSG00225052927	pseudogene	Chr10:84842984-84843460 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010048305	pseudogene	Chr10:79858065-79858541 (+)
WSB/EiJ	ENSIUOG00005051347	pseudogene	Chr10:78439008-78439484 (+)

Homology

• Gene Tree
  Gm8290
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8290
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000111985 (Evidence)
• NCBI Gene
  666790

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111985	Ensembl Gene Model | MGI Sequence Detail	477	C57BL/6J
transcript	ENSMUST00000218202	Ensembl | MGI Sequence Detail	477	Not Applicable
polypeptide	XP_036012032	RefSeq | MGI Sequence Detail	155	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87