Gm16428 Pseudogene Detail

Summary

• Symbol
  Gm16428
• Name
  predicted gene 16428

• Feature Type
  pseudogene
• IDs
  MGI:3648457
  NCBI Gene: 100040789
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:53136852-53146142 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 30.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  322 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648457	pseudogene	ChrX:53132677-53146142 (+)
129S1/SvImJ	ENSMUSG00200038261	pseudogene	ChrX:37105344-37118810 (+)
A/J	ENSMUSG00195017246	pseudogene	ChrX:39375411-39388893 (-)
AKR/J	ENSMUSG00220039719	pseudogene	ChrX:36431044-36444508 (+)
BALB/cJ	ENSMUSG00180036393	pseudogene	ChrX:37335258-37348738 (+)
C3H/HeJ	ENSMUSG00175044987	pseudogene	ChrX:40282390-40295870 (+)
C57BL/6NJ	ENSMUSG00215048806	pseudogene	ChrX:37500227-37513691 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033730	pseudogene	ChrX:21316249-21329522 (+)
CBA/J	ENSMUSG00210042829	pseudogene	ChrX:37754761-37768225 (+)
DBA/2J	ENSMUSG00185034621	pseudogene	ChrX:48492311-48505771 (+)
FVB/NJ	ENSMUSG00205031556	pseudogene	ChrX:36060724-36074208 (+)
JF1/MsJ	ENSUMUG00000029750	pseudogene	ChrX:67521726-67535023 (+)
LP/J	ENSMUSG00230030643	pseudogene	ChrX:55051168-55064630 (+)
NOD/ShiLtJ	ENSMUSG00190037255	pseudogene	ChrX:37067252-37080716 (+)
NZO/HlLtJ	ENSMUSG00225043857	pseudogene	ChrX:60216631-60230093 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047558	pseudogene	ChrX:37934617-37948043 (+)

Homology

• Gene Tree
  Gm16428
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000082817 (Evidence)
• NCBI Gene
  100040789

Representative Sequences			Length	Strain/Species
genomic	100040789	NCBI Gene Model | MGI Sequence Detail	9291	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;