Gm5963 Pseudogene Detail

Summary

• Symbol
  Gm5963
• Name
  predicted pseudogene 5963

• Feature Type
  pseudogene
• IDs
  MGI:3648418
  NCBI Gene: 102638850
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:35393691-35393926 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 25.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648418	pseudogene	Chr16:35393640-35393969 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220029962	pseudogene	Chr16:32246261-32246508 (-)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175033869	pseudogene	Chr16:32311910-32312145 (-)
C57BL/6NJ	ENSMUSG00215021529	pseudogene	Chr16:32200988-32201223 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009438	pseudogene	Chr10:73870718-73870965 (+)
CAST/EiJ	ENSTCUG00005032966	pseudogene	Chr16:32574625-32574872 (-)
CBA/J	ENSMUSG00210028589	pseudogene	Chr16:32369077-32369312 (-)
DBA/2J	ENSMUSG00185025573	pseudogene	Chr16:32272202-32272437 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005027878	pseudogene	Chr16:32433676-32433911 (-)

Homology

• Gene Tree
  Gm5963
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000052192 (Evidence)
• NCBI Gene
  102638850

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052192	Ensembl Gene Model | MGI Sequence Detail	236	C57BL/6J
transcript	ENSMUST00000143451	Ensembl | MGI Sequence Detail	236	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5963:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140899	Chr16:35393963-35393974 (-)	-43 bp