Gm5149 Gene Detail

Summary

• Symbol
  Gm5149
• Name
  predicted gene 5149
• Synonyms
  Gm42649

• Feature Type
  lncRNA gene
• IDs
  MGI:3648405
  NCBI Gene: 381483
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:149037883-149046274 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648405	lncRNA gene	Chr3:149009354-149142607 (+)
129S1/SvImJ	ENSMUSG00200003955	lncRNA gene	Chr3:145934871-145976095 (+)
A/J	ENSMUSG00195003473	lncRNA gene	Chr3:146069141-146110329 (+)
AKR/J	ENSMUSG00220000489	lncRNA gene	Chr3:144482167-144520041 (+)
BALB/cJ	ENSMUSG00180027588	lncRNA gene	Chr3:145926887-145968054 (+)
C3H/HeJ	ENSMUSG00175020179	lncRNA gene	Chr3:145516074-145557246 (+)
C57BL/6NJ	ENSMUSG00215018751	lncRNA gene	Chr3:146201796-146242819 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005789	lincRNA gene	Chr3:142401326-142442040 (+)
CAST/EiJ	ENSTCUG00005001394	lncRNA gene	Chr3:146606877-146648256 (+)
CBA/J	ENSMUSG00210004743	lncRNA gene	Chr3:146166116-146207351 (+)
DBA/2J	ENSMUSG00185025334	lncRNA gene	Chr3:146816164-146854040 (+)
FVB/NJ	ENSMUSG00205009441	lncRNA gene	Chr3:145061918-145103104 (+)
JF1/MsJ	ENSUMUG00000034394	lncRNA gene	Chr3:145571920-145612888 (+)
LP/J	ENSMUSG00230019802	lncRNA gene	Chr3:148688275-148729497 (+)
NOD/ShiLtJ	ENSMUSG00190004881	lncRNA gene	Chr3:147167187-147205062 (+)
NZO/HlLtJ	ENSMUSG00225002832	lncRNA gene	Chr3:151204123-151245272 (+)
PWK/PhJ	ENSLUMG00010001870	lncRNA gene	Chr3:145491153-145532340 (+)
SPRET/EiJ	ENSMSPG00010008383	lncRNA gene	Chr3:146782861-146821497 (+)
WSB/EiJ	ENSIUOG00005015903	lncRNA gene	Chr3:146271205-146311850 (+)

Homology

• Gene Tree
  Gm5149
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000105797 (Evidence)
• NCBI Gene
  381483

Representative Sequences			Length	Strain/Species
genomic	381483	NCBI Gene Model | MGI Sequence Detail	8392	C57BL/6J
transcript	AK132813	GenBank | ENA | DDBJ | MGI Sequence Detail	1251	C57BL/6J
polypeptide	Q3V0Y0	UniProt | EBI | MGI Sequence Detail	119	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5662786

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5149:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32376	Chr3:149040476-149040506 (+)	2,608 bp