Gm16401 Gene Detail

Summary

• Symbol
  Gm16401
• Name
  predicted gene 16401

• Feature Type
  lncRNA gene
• IDs
  MGI:3648398
  NCBI Gene: 100041413
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:44257784-44265916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 24.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  343 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648398	lncRNA gene	Chr5:44257784-44265916 (+)
129S1/SvImJ	ENSMUSG00200033548	lncRNA gene	Chr5:39749294-39751367 (+)
A/J	ENSMUSG00195029605	lncRNA gene	Chr5:39154678-39156751 (+)
AKR/J	ENSMUSG00220002443	lncRNA gene	Chr5:39191405-39193478 (+)
BALB/cJ	ENSMUSG00180024239	lncRNA gene	Chr5:38982060-38984134 (+)
C3H/HeJ	ENSMUSG00175015270	lncRNA gene	Chr5:40950316-40952389 (+)
C57BL/6NJ	ENSMUSG00215006135	lncRNA gene	Chr5:39709087-39711160 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003666	antisense lncRNA gene	Chr5:38494133-38496211 (+)
CAST/EiJ	ENSTCUG00005025405	lncRNA gene	Chr5:39086623-39088697 (+)
CBA/J	ENSMUSG00210005515	lncRNA gene	Chr5:39915435-39917508 (+)
DBA/2J	ENSMUSG00185001785	lncRNA gene	Chr5:41793564-41795637 (+)
FVB/NJ	ENSMUSG00205022180	lncRNA gene	Chr5:38703503-38705576 (+)
JF1/MsJ	ENSUMUG00000003146	lncRNA gene	Chr5:46365299-46367372 (+)
LP/J	ENSMUSG00230002606	lncRNA gene	Chr5:46449207-46451280 (+)
NOD/ShiLtJ	ENSMUSG00190003486	lncRNA gene	Chr5:38990210-38992283 (+)
NZO/HlLtJ	ENSMUSG00225028576	lncRNA gene	Chr5:51605200-51607274 (+)
PWK/PhJ	ENSLUMG00010023300	lncRNA gene	Chr5:39033560-39035633 (+)
SPRET/EiJ	ENSMSPG00010039611	lncRNA gene	Chr5:40310484-40312557 (+)
WSB/EiJ	ENSIUOG00005019342	lncRNA gene	Chr5:41871783-41873856 (+)

Homology

• Gene Tree
  Gm16401
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm16401
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000072962 (Evidence)
• NCBI Gene
  100041413

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072962	Ensembl Gene Model | MGI Sequence Detail	8133	C57BL/6J
transcript	ENSMUST00000197463	Ensembl | MGI Sequence Detail	2074	Not Applicable
polypeptide	Q3URN1	UniProt | EBI | MGI Sequence Detail	153	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707