Gm5836 Pseudogene Detail

Summary

• Symbol
  Gm5836
• Name
  predicted gene 5836

• Feature Type
  pseudogene
• IDs
  MGI:3648384
  NCBI Gene: 545396
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:25924023-25924793 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648384	pseudogene	Chr17:25924023-25924796 (+)
129S1/SvImJ	ENSMUSG00200054031	pseudogene	Chr17:21370007-21370780 (+)
A/J	ENSMUSG00195054370	pseudogene	Chr17:22386180-22386953 (+)
AKR/J	ENSMUSG00220053416	pseudogene	Chr17:21433954-21434727 (+)
BALB/cJ	ENSMUSG00180051569	pseudogene	Chr17:21668018-21668791 (+)
C3H/HeJ	ENSMUSG00175054124	pseudogene	Chr17:21425264-21426037 (+)
C57BL/6NJ	ENSMUSG00215054636	pseudogene	Chr17:21433595-21434368 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051003	pseudogene	Chr17:22016129-22016897 (+)
CBA/J	ENSMUSG00210050876	pseudogene	Chr17:21264096-21264869 (+)
DBA/2J	ENSMUSG00185053326	pseudogene	Chr17:23474433-23475206 (+)
FVB/NJ	ENSMUSG00205052892	pseudogene	Chr17:21729853-21730626 (+)
JF1/MsJ	ENSUMUG00000058062	pseudogene	Chr17:22929877-22930648 (+)
LP/J	ENSMUSG00230055102	pseudogene	Chr17:24874554-24875327 (+)
NOD/ShiLtJ	ENSMUSG00190054430	pseudogene	Chr17:21363159-21363932 (+)
NZO/HlLtJ	ENSMUSG00225054403	pseudogene	Chr17:26793528-26794301 (+)
PWK/PhJ	ENSLUMG00010053298	pseudogene	Chr17:20848892-20849660 (+)
SPRET/EiJ	ENSMSPG00010050631	pseudogene	Chr17:22168654-22169417 (+)
WSB/EiJ	ENSIUOG00005052208	pseudogene	Chr17:22106747-22107520 (+)

Homology

• Gene Tree
  Gm5836
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5836
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117657 (Evidence)
• NCBI Gene
  545396

Representative Sequences			Length	Strain/Species
genomic	545396	NCBI Gene Model | MGI Sequence Detail	771	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044