Rps4l-ps Pseudogene Detail

Summary

• Symbol
  Rps4l-ps
• Name
  ribosomal protein S4-like, pseudogene
• Synonyms
  Gm6816

• Feature Type
  pseudogene
• IDs
  MGI:3648347
  NCBI Gene: 627967
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:114526194-114526961 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 60.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648347	pseudogene	Chr7:114526083-114527016 (-)
129S1/SvImJ	ENSMUSG00200034769	pseudogene	Chr7:101079189-101079956 (-)
A/J	ENSMUSG00195041176	pseudogene	Chr7:105572034-105572801 (-)
AKR/J	ENSMUSG00220041825	pseudogene	Chr7:98977171-98977938 (-)
BALB/cJ	ENSMUSG00180033499	pseudogene	Chr7:102235914-102236681 (-)
C3H/HeJ	ENSMUSG00175026633	pseudogene	Chr7:102868347-102869114 (-)
C57BL/6NJ	ENSMUSG00215041878	pseudogene	Chr7:102189629-102190396 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044210	pseudogene	Chr7:105552197-105552961 (-)
CBA/J	ENSMUSG00210024951	pseudogene	Chr7:102695162-102695929 (-)
DBA/2J	ENSMUSG00185022507	pseudogene	Chr7:107045429-107046196 (-)
FVB/NJ	ENSMUSG00205050340	pseudogene	Chr7:102660033-102660800 (-)
JF1/MsJ	ENSUMUG00000051951	pseudogene	Chr7:112101019-112101783 (-)
LP/J	ENSMUSG00230038422	pseudogene	Chr7:113165418-113166185 (-)
NOD/ShiLtJ	ENSMUSG00190029659	pseudogene	Chr7:102869335-102870102 (-)
NZO/HlLtJ	ENSMUSG00225040194	pseudogene	Chr7:111385429-111386196 (-)
PWK/PhJ	ENSLUMG00010042981	pseudogene	Chr7:101249171-101249935 (-)
SPRET/EiJ	ENSMSPG00010009625	pseudogene	Chr7:102445818-102446570 (-)
WSB/EiJ	ENSIUOG00005012741	pseudogene	Chr7:103526125-103526892 (-)

Homology

• Gene Tree
  Rps4l-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Rps4l-ps
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000046411 (Evidence)
• NCBI Gene
  627967

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000046411	Ensembl Gene Model | MGI Sequence Detail	768	C57BL/6J
transcript	ENSMUST00000059737	Ensembl | MGI Sequence Detail	768	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:61682 Hagiwara N, et al., Sox6 is a candidate gene for p100H myopathy, heart block, and sudden neonatal death. Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4180-5
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Rps4l-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74357	Chr7:114527014-114527016 (-)	-54 bp