Gm9246 Pseudogene Detail

Summary

• Symbol
  Gm9246
• Name
  predicted gene 9246

• Feature Type
  pseudogene
• IDs
  MGI:3648324
  NCBI Gene: 668565
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:40984865-40988243 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  274 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648324	pseudogene	Chr7:40984808-40988297 (+)
129S1/SvImJ	ENSMUSG00200027214	pseudogene	Chr7:28789098-28792587 (+)
A/J	ENSMUSG00195051443	pseudogene	Chr7:32639749-32643239 (+)
AKR/J	ENSMUSG00220031275	pseudogene	Chr7:19463565-19467056 (+)
BALB/cJ	ENSMUSG00180023890	pseudogene	Chr7:29987494-29990983 (+)
C3H/HeJ	ENSMUSG00175044896	pseudogene	Chr7:30224250-30227739 (+)
C57BL/6NJ	ENSMUSG00215024917	pseudogene	Chr7:29262812-29266301 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048437	pseudogene	Chr7:32749096-32752580 (+)
CBA/J	ENSMUSG00210027285	pseudogene	Chr7:30301787-30305276 (+)
DBA/2J	ENSMUSG00185051174	pseudogene	Chr7:34159815-34163301 (+)
FVB/NJ	ENSMUSG00205047278	pseudogene	Chr7:30318531-30322022 (+)
JF1/MsJ	ENSUMUG00000033488	pseudogene	Chr7:38635833-38639321 (+)
LP/J	ENSMUSG00230014553	pseudogene	Chr7:39498412-39501901 (+)
NOD/ShiLtJ	ENSMUSG00190050907	pseudogene	Chr7:30514960-30518451 (+)
NZO/HlLtJ	ENSMUSG00225010283	pseudogene	Chr7:37879036-37882528 (+)
PWK/PhJ	ENSLUMG00010024598	pseudogene	Chr7:29054388-29057879 (+)
SPRET/EiJ	ENSMSPG00010005898	pseudogene	Chr7:29065630-29069114 (+)
WSB/EiJ	ENSIUOG00005009710	pseudogene	Chr7:30025410-30028906 (+)

Homology

• Gene Tree
  Gm9246
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082080 (Evidence)
• NCBI Gene
  668565

Representative Sequences			Length	Strain/Species
genomic	668565	NCBI Gene Model | MGI Sequence Detail	3379	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm9246:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65967	Chr7:40984859-40984875 (+)	2 bp