Gm6744 Pseudogene Detail

Summary

• Symbol
  Gm6744
• Name
  predicted gene 6744

• Feature Type
  pseudogene
• IDs
  MGI:3648299
  NCBI Gene: 627311
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:166228985-166229527 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 78.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648299	pseudogene	ChrX:166228438-166229605 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015009	pseudogene	ChrX:165615106-165615648 (-)
A/J	MGP_AJ_G0014999	pseudogene	ChrX:164755170-164755712 (-)
AKR/J	MGP_AKRJ_G0014938	pseudogene	ChrX:170029470-170030012 (-)
BALB/cJ	MGP_BALBcJ_G0014953	pseudogene	ChrX:162700947-162701489 (-)
C3H/HeJ	MGP_C3HHeJ_G0014792	pseudogene	ChrX:165921254-165921796 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015440	pseudogene	ChrX:170435690-170436232 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013059	pseudogene	ChrX:155551427-155551969 (+)
CAST/EiJ	MGP_CASTEiJ_G0014395	pseudogene	ChrX:144803342-144803884 (-)
CBA/J	MGP_CBAJ_G0014778	pseudogene	ChrX:175387678-175388220 (-)
DBA/2J	MGP_DBA2J_G0014861	pseudogene	ChrX:163557547-163558089 (-)
FVB/NJ	MGP_FVBNJ_G0014842	pseudogene	ChrX:162703952-162704494 (-)
LP/J	MGP_LPJ_G0014962	pseudogene	ChrX:166687944-166688486 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014888	pseudogene	ChrX:184069572-184070114 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015425	pseudogene	ChrX:165070807-165071349 (-)
PWK/PhJ	MGP_PWKPhJ_G0014188	pseudogene	ChrX:141526802-141527344 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013974	pseudogene	ChrX:145342556-145343098 (+)
WSB/EiJ	MGP_WSBEiJ_G0014477	pseudogene	ChrX:162913714-162914256 (-)

Homology

• Gene Tree
  Gm6744
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081216 (Evidence)
• NCBI Gene
  627311

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081216	Ensembl Gene Model | MGI Sequence Detail	543	C57BL/6J
transcript	ENSMUST00000119303	Ensembl | MGI Sequence Detail	543	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm6744:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164618	ChrX:166229567-166229583 (-)	-48 bp
Tssr164617	ChrX:166229545-166229563 (-)	-27 bp