Gm6173 Pseudogene Detail

Summary

• Symbol
  Gm6173
• Name
  predicted gene 6173

• Feature Type
  pseudogene
• IDs
  MGI:3648296
  NCBI Gene: 620693
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:90035945-90037203 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 59.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648296	pseudogene	Chr18:90035748-90037284 (-)
129S1/SvImJ	ENSMUSG00200015494	pseudogene	Chr18:87360463-87361721 (-)
A/J	ENSMUSG00195001357	pseudogene	Chr18:87310336-87311594 (-)
AKR/J	ENSMUSG00220016730	pseudogene	Chr18:87734031-87735289 (+)
BALB/cJ	ENSMUSG00180002700	pseudogene	Chr18:87911695-87912953 (-)
C3H/HeJ	ENSMUSG00175018959	pseudogene	Chr18:87424033-87425291 (-)
C57BL/6NJ	ENSMUSG00215004277	pseudogene	Chr18:86894108-86895366 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005512	pseudogene	Chr18:86304070-86305328 (-)
CBA/J	ENSMUSG00210018140	pseudogene	Chr18:87374670-87375928 (-)
DBA/2J	ENSMUSG00185004349	pseudogene	Chr18:87261893-87263151 (-)
FVB/NJ	ENSMUSG00205014450	pseudogene	Chr18:86710430-86711688 (-)
JF1/MsJ	ENSUMUG00000018629	pseudogene	Chr18:87131583-87132841 (-)
LP/J	ENSMUSG00230017686	pseudogene	Chr18:89423504-89424762 (-)
NOD/ShiLtJ	ENSMUSG00190003494	pseudogene	Chr18:87088976-87090234 (-)
NZO/HlLtJ	ENSMUSG00225023486	pseudogene	Chr18:89278318-89279576 (-)
PWK/PhJ	ENSLUMG00010004123	pseudogene	Chr18:87571473-87572731 (-)
SPRET/EiJ	ENSMSPG00010001339	pseudogene	Chr18:88094306-88095604 (-)
WSB/EiJ	ENSIUOG00005016449	pseudogene	Chr18:86781373-86782631 (-)

Homology

• Gene Tree
  Gm6173
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm6173
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118035 (Evidence)
• NCBI Gene
  620693

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118035	Ensembl Gene Model | MGI Sequence Detail	1259	C57BL/6J
transcript	ENSMUST00000237041	Ensembl | MGI Sequence Detail	1259	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:45709 Melloy PG, et al., No turning, a mouse mutation causing left-right and axial patterning defects. Dev Biol. 1998 Jan 1;193(1):77-89
• Latest
  J:132045 Chatterjee B, et al., Nt mutation causing laterality defects associated with deletion of rotatin. Mamm Genome. 2007 May;18(5):310-5