Gm7540 Pseudogene Detail

Summary

• Symbol
  Gm7540
• Name
  predicted gene 7540

• Feature Type
  pseudogene
• IDs
  MGI:3648279
  NCBI Gene: 665206
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:65252525-65253450 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 34.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648279	pseudogene	Chr10:65252525-65253451 (+)
129S1/SvImJ	ENSMUSG00200017910	pseudogene	Chr10:61940743-61941668 (+)
A/J	ENSMUSG00195005875	pseudogene	Chr10:62237715-62238640 (+)
AKR/J	ENSMUSG00220029770	pseudogene	Chr10:61946747-61947672 (+)
BALB/cJ	ENSMUSG00180008074	pseudogene	Chr10:62276777-62277702 (+)
C3H/HeJ	ENSMUSG00175013386	pseudogene	Chr10:62137764-62138689 (+)
C57BL/6NJ	ENSMUSG00215004132	pseudogene	Chr10:61884253-61885178 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028028	pseudogene	Chr10:61884424-61885349 (+)
CBA/J	ENSMUSG00210009906	pseudogene	Chr10:62017636-62018561 (+)
DBA/2J	ENSMUSG00185020649	pseudogene	Chr10:62354037-62354962 (+)
FVB/NJ	ENSMUSG00205008229	pseudogene	Chr10:62057252-62058177 (+)
JF1/MsJ	ENSUMUG00000025762	pseudogene	Chr10:63597479-63598404 (+)
LP/J	ENSMUSG00230020357	pseudogene	Chr10:64143857-64144782 (+)
NOD/ShiLtJ	ENSMUSG00190008252	pseudogene	Chr10:62345245-62346170 (+)
NZO/HlLtJ	ENSMUSG00225045366	pseudogene	Chr10:68437794-68438719 (+)
PWK/PhJ	ENSLUMG00010008319	pseudogene	Chr10:61967502-61968426 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005035159	pseudogene	Chr10:61940181-61941106 (+)

Homology

• Gene Tree
  Gm7540
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm7540
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112114 (Evidence)
• NCBI Gene
  665206

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112114	Ensembl Gene Model | MGI Sequence Detail	926	C57BL/6J
transcript	ENSMUST00000219764	Ensembl | MGI Sequence Detail	926	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87