Gm6283 Pseudogene Detail

Summary

• Symbol
  Gm6283
• Name
  predicted gene 6283

• Feature Type
  pseudogene
• IDs
  MGI:3648260
  NCBI Gene: 102638184
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:127149018-127150017 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 74.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648260	pseudogene	Chr10:127148879-127150310 (+)
129S1/SvImJ	ENSMUSG00200013536	pseudogene	Chr10:123501992-123502991 (+)
A/J	ENSMUSG00195018140	pseudogene	Chr10:123966106-123967105 (+)
AKR/J	ENSMUSG00220006543	pseudogene	Chr10:123570607-123571606 (+)
BALB/cJ	ENSMUSG00180011473	pseudogene	Chr10:123957171-123958170 (+)
C3H/HeJ	ENSMUSG00175006283	pseudogene	Chr10:123955810-123956809 (+)
C57BL/6NJ	ENSMUSG00215024814	pseudogene	Chr10:123567202-123568201 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009462	pseudogene	Chr10:119667584-119668591 (+)
CAST/EiJ	ENSTCUG00005042121	pseudogene	Chr10:122935138-122936137 (+)
CBA/J	ENSMUSG00210009308	pseudogene	Chr10:123780004-123781003 (+)
DBA/2J	ENSMUSG00185027841	pseudogene	Chr10:123932134-123933133 (+)
FVB/NJ	ENSMUSG00205026550	pseudogene	Chr10:123176729-123177728 (+)
JF1/MsJ	ENSUMUG00000045964	pseudogene	Chr10:125227390-125228388 (+)
LP/J	ENSMUSG00230034071	pseudogene	Chr10:125849238-125850237 (+)
NOD/ShiLtJ	ENSMUSG00190016617	pseudogene	Chr10:123999161-124000160 (+)
NZO/HlLtJ	ENSMUSG00225037741	pseudogene	Chr10:130049872-130050871 (+)
PWK/PhJ	ENSLUMG00010010437	pseudogene	Chr10:123687593-123688591 (+)
SPRET/EiJ	ENSMSPG00010039105	pseudogene	Chr10:125637451-125638451 (+)
WSB/EiJ	ENSIUOG00005009006	pseudogene	Chr10:123566492-123567491 (+)

Homology

• Gene Tree
  Gm6283
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000098057 (Evidence)
• NCBI Gene
  102638184

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098057	Ensembl Gene Model | MGI Sequence Detail	1000	C57BL/6J
transcript	ENSMUST00000182369	Ensembl | MGI Sequence Detail	1000	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9