Ncoa4-ps Pseudogene Detail

Summary

• Symbol
  Ncoa4-ps
• Name
  nuclear receptor coactivator 4, pseudogene
• Synonyms
  Gm6768

• Feature Type
  pseudogene
• IDs
  MGI:3648259
  NCBI Gene: 627557
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:119224713-119226590 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 63.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648259	pseudogene	Chr12:119224668-119228010 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180006561	pseudogene	Chr12:114099569-114101446 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215004852	pseudogene	Chr12:112096730-112098607 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019087	protein coding gene	Chr14:24494332-24507715 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205005267	pseudogene	Chr12:113467091-113468968 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230046288	pseudogene	Chr12:121321219-121323096 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Ncoa4-ps
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  62 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Ncoa4-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  GEISHA NCOA4

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000021908 (Evidence)
• NCBI Gene
  627557

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000021908	Ensembl Gene Model | MGI Sequence Detail	1878	C57BL/6J
transcript	ENSMUST00000022467	Ensembl | MGI Sequence Detail	1878	Not Applicable

Other
Accession IDs

MGI:6363019

References

• Summaries
  All 67

  Diseases 4

  Phenotypes 62
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:385727 Harada K, et al., Preventing Differentiation Towards Primitive Macrophages in Stem Cells With Down Syndrome. Immunology. 2026 Mar;177(3):596-612

TSS for Ncoa4-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115573	Chr12:119224665-119224671 (+)	-45 bp