Rpl15-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl15-ps2
• Name
  ribosomal protein L15, pseudogene 2
• Synonyms
  Gm7885

• Feature Type
  pseudogene
• IDs
  MGI:3648255
  NCBI Gene: 666001
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:71968219-71968831 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 39.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648255	pseudogene	Chr9:71967843-71968902 (+)
129S1/SvImJ	ENSMUSG00200044022	pseudogene	Chr9:69021612-69022224 (+)
A/J	ENSMUSG00195026748	pseudogene	Chr9:68820253-68820865 (+)
AKR/J	ENSMUSG00220043552	pseudogene	Chr9:68984613-68985225 (+)
BALB/cJ	ENSMUSG00180017825	pseudogene	Chr9:68934619-68935231 (+)
C3H/HeJ	ENSMUSG00175012959	pseudogene	Chr9:68947826-68948438 (+)
C57BL/6NJ	ENSMUSG00215035638	pseudogene	Chr9:68915219-68915831 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033008	pseudogene	Chr9:68751543-68752155 (+)
CBA/J	ENSMUSG00210014825	pseudogene	Chr9:69028395-69029007 (+)
DBA/2J	ENSMUSG00185035294	pseudogene	Chr9:69052233-69052845 (+)
FVB/NJ	ENSMUSG00205033892	pseudogene	Chr9:69325614-69326226 (+)
JF1/MsJ	ENSUMUG00000039188	pseudogene	Chr9:69079272-69079884 (+)
LP/J	ENSMUSG00230028147	pseudogene	Chr9:69216631-69217243 (+)
NOD/ShiLtJ	ENSMUSG00190023407	pseudogene	Chr9:69156315-69156927 (+)
NZO/HlLtJ	ENSMUSG00225047154	pseudogene	Chr9:69358822-69359434 (+)
PWK/PhJ	ENSLUMG00010027451	pseudogene	Chr9:69011158-69011770 (+)
SPRET/EiJ	ENSMSPG00010021648	pseudogene	Chr9:70106377-70106989 (+)
WSB/EiJ	ENSIUOG00005027389	pseudogene	Chr9:68521539-68522151 (+)

Homology

• Gene Tree
  Rpl15-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl15-ps2
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098915 (Evidence)
• NCBI Gene
  666001

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098915	Ensembl Gene Model | MGI Sequence Detail	613	C57BL/6J
transcript	ENSMUST00000184247	Ensembl | MGI Sequence Detail	613	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl15-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85966	Chr9:71968178-71968179 (+)	-40 bp