Gm7854 Gene Detail

Summary

• Symbol
  Gm7854
• Name
  predicted gene 7854
• Synonyms
  ENSMUSG00000054483

• Feature Type
  lncRNA gene
• IDs
  MGI:3648234
  NCBI Gene: 665934
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:43309029-43392697 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 23.65 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2149 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648234	lncRNA gene	Chr5:43306203-43392804 (-)
129S1/SvImJ	ENSMUSG00200033152	lncRNA gene	Chr5:38799945-38883620 (-)
A/J	ENSMUSG00195030351	lncRNA gene	Chr5:38205295-38288973 (-)
AKR/J	ENSMUSG00220002549	lncRNA gene	Chr5:38242032-38325708 (-)
BALB/cJ	ENSMUSG00180024110	lncRNA gene	Chr5:38038956-38113513 (-)
C3H/HeJ	ENSMUSG00175020627	lncRNA gene	Chr5:40001018-40084691 (-)
C57BL/6NJ	ENSMUSG00215006225	lncRNA gene	Chr5:38759759-38843440 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003664	antisense lncRNA gene	Chr5:37601781-37677077 (-)
CAST/EiJ	ENSTCUG00005025132	lncRNA gene	Chr5:38125454-38201693 (-)
CBA/J	ENSMUSG00210005361	lncRNA gene	Chr5:38966121-39049764 (-)
DBA/2J	ENSMUSG00185001928	lncRNA gene	Chr5:40857959-40932242 (-)
FVB/NJ	ENSMUSG00205019984	lncRNA gene	Chr5:37774676-37848965 (-)
JF1/MsJ	ENSUMUG00000002308	lncRNA gene	Chr5:45434171-45511523 (-)
LP/J	ENSMUSG00230002865	lncRNA gene	Chr5:45499918-45583591 (-)
NOD/ShiLtJ	ENSMUSG00190003381	lncRNA gene	Chr5:38040873-38124543 (-)
NZO/HlLtJ	ENSMUSG00225017734	lncRNA gene	Chr5:50661562-50740614 (-)
PWK/PhJ	ENSLUMG00010023609	lncRNA gene	Chr5:38092475-38169489 (-)
SPRET/EiJ	ENSMSPG00010036938	lncRNA gene	Chr5:39364115-39439367 (-)
WSB/EiJ	ENSIUOG00005019186	lncRNA gene	Chr5:40934226-41009363 (-)

Homology

• Gene Tree
  Gm7854
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm7854
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085720 (Evidence)
• NCBI Gene
  665934

Representative Sequences			Length	Strain/Species
genomic	665934	NCBI Gene Model | MGI Sequence Detail	83669	C57BL/6J
transcript	NR_028417	RefSeq | MGI Sequence Detail	1432	C57BL/6
polypeptide	Q8C9M3	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3642844

References

• Summaries
  All 31

  Diseases 1

  Phenotypes 20
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9