Gm5430 Pseudogene Detail

Summary

• Symbol
  Gm5430
• Name
  predicted gene 5430

• Feature Type
  pseudogene
• IDs
  MGI:3648216
  NCBI Gene: 432543
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:25545586-25546500 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648216	pseudogene	Chr17:25545388-25546506 (-)
129S1/SvImJ	ENSMUSG00200054055	pseudogene	Chr17:20988724-20989638 (-)
A/J	ENSMUSG00195054487	pseudogene	Chr17:22006520-22007435 (-)
AKR/J	ENSMUSG00220053434	pseudogene	Chr17:21053197-21054112 (-)
BALB/cJ	ENSMUSG00180050989	pseudogene	Chr17:21286733-21287648 (-)
C3H/HeJ	ENSMUSG00175054242	pseudogene	Chr17:21045381-21046296 (-)
C57BL/6NJ	ENSMUSG00215054214	pseudogene	Chr17:21053896-21054810 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050508	pseudogene	Chr17:21630413-21631328 (-)
CBA/J	ENSMUSG00210051496	pseudogene	Chr17:20884215-20885130 (-)
DBA/2J	ENSMUSG00185053909	pseudogene	Chr17:23094831-23095746 (-)
FVB/NJ	ENSMUSG00205053141	pseudogene	Chr17:21349799-21350713 (-)
JF1/MsJ	ENSUMUG00000058076	pseudogene	Chr17:22545430-22546344 (-)
LP/J	ENSMUSG00230055109	pseudogene	Chr17:24493338-24494252 (-)
NOD/ShiLtJ	ENSMUSG00190054344	pseudogene	Chr17:20983580-20984494 (-)
NZO/HlLtJ	ENSMUSG00225054665	pseudogene	Chr17:26413943-26414857 (-)
PWK/PhJ	ENSLUMG00010053597	pseudogene	Chr17:20462684-20463592 (-)
SPRET/EiJ	ENSMSPG00010050009	pseudogene	Chr17:21789646-21790541 (-)
WSB/EiJ	ENSIUOG00005052378	pseudogene	Chr17:21727397-21728314 (-)

Homology

• Gene Tree
  Gm5430
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5430
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098180 (Evidence)
• NCBI Gene
  432543

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098180	Ensembl Gene Model | MGI Sequence Detail	915	C57BL/6J
transcript	ENSMUST00000182525	Ensembl | MGI Sequence Detail	915	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044