About   Help   FAQ
Gm5577 Gene Detail
Summary
  • Symbol
    Gm5577
  • Name
    predicted gene 5577
Location &
Maps
more
  • Sequence Map
    Chr6:87958665-87961162 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 39.13 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    161 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648213
 lncRNA gene Chr6:87957865-87987762 (+)
129S1/SvImJ ENSMUSG00200045806
 lncRNA gene Chr6:84900773-84925361 (+)
A/J ENSMUSG00195041796
 lncRNA gene Chr6:84604132-84628720 (+)
AKR/J ENSMUSG00220035699
 lncRNA gene Chr6:83505387-83529977 (+)
BALB/cJ ENSMUSG00180019941
 lncRNA gene Chr6:84978047-85002637 (+)
C3H/HeJ ENSMUSG00175040440
 lncRNA gene Chr6:92396312-92420900 (-)
C57BL/6NJ ENSMUSG00215035559
 lncRNA gene Chr6:84987557-85012147 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003896
 antisense lncRNA gene Chr6:84077719-84080963 (+)
CAST/EiJ ENSTCUG00005018293
 lncRNA gene Chr6:84907910-84932449 (+)
CBA/J ENSMUSG00210046552
 lncRNA gene Chr6:84799412-84824002 (+)
DBA/2J ENSMUSG00185046232
 lncRNA gene Chr6:85346731-85371319 (+)
FVB/NJ ENSMUSG00205044308
 lncRNA gene Chr6:83972933-83997522 (+)
JF1/MsJ ENSUMUG00000050918
 lncRNA gene Chr6:84274733-84299348 (+)
LP/J ENSMUSG00230050505
 lncRNA gene Chr6:86481541-86506129 (+)
NOD/ShiLtJ ENSMUSG00190043384
 lncRNA gene Chr6:84418584-84443172 (+)
NZO/HlLtJ ENSMUSG00225021164
 lncRNA gene Chr6:88438269-88462849 (+)
PWK/PhJ ENSLUMG00010035486
 lncRNA gene Chr6:83695404-83720231 (+)
SPRET/EiJ ENSMSPG00010045690
 lncRNA gene Chr6:85840674-85864962 (+)
WSB/EiJ ENSIUOG00005035265
 lncRNA gene Chr6:85324983-85349556 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    670
  • Tissues
    9
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    53
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 434064 NCBI Gene Model | MGI Sequence Detail 2498 C57BL/6J ±  kb
transcript NR_026990 RefSeq | MGI Sequence Detail 1423 C57BL/6  
polypeptide Q9CRN2 UniProt | EBI | MGI Sequence Detail 200 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Phenotypes 8
  • Earliest
    J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
  • Latest
    J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory