Gm5544 MGI Mouse Gene Detail - MGI:3648209

Symbol

Gm5544
Name

predicted gene 5544

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:3648209
NCBI Gene: 433632
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr3:97837489-97874334 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 42.36 cM
Mapping Data

1 experiment

SNPs within 2kb

1216 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648209	protein coding gene	Chr3:97837487-97874440 (+)
129S1/SvImJ	ENSMUSG00200044882	lncRNA gene	Chr3:94457855-94494980 (+)
A/J	ENSMUSG00195050670	lncRNA gene	Chr3:94867791-94904683 (+)
AKR/J	ENSMUSG00220043036	lncRNA gene	Chr3:93219939-93256833 (+)
BALB/cJ	ENSMUSG00180043755	lncRNA gene	Chr3:94814437-94851324 (+)
C3H/HeJ	ENSMUSG00175030092	lncRNA gene	Chr3:94426138-94463023 (+)
C57BL/6NJ	ENSMUSG00215038523	lncRNA gene	Chr3:95196123-95232996 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005683	lincRNA gene	Chr3:91991305-92027893 (+)
CAST/EiJ	ENSTCUG00005020832	lncRNA gene	Chr3:95125209-95161538 (+)
CBA/J	ENSMUSG00210051365	lncRNA gene	Chr3:94979119-95016008 (+)
DBA/2J	ENSMUSG00185044888	lncRNA gene	Chr3:95436404-95473286 (+)
FVB/NJ	ENSMUSG00205029481	lncRNA gene	Chr3:94092682-94129919 (+)
JF1/MsJ	ENSUMUG00000051896	lncRNA gene	Chr3:94346013-94382627 (+)
LP/J	ENSMUSG00230047221	lncRNA gene	Chr3:97389587-97426704 (+)
NOD/ShiLtJ	ENSMUSG00190047892	lncRNA gene	Chr3:95612724-95648948 (+)
NZO/HlLtJ	ENSMUSG00225012990	lncRNA gene	Chr3:99867923-99904822 (+)
PWK/PhJ	ENSLUMG00010030409	lncRNA gene	Chr3:94339962-94376668 (+)
SPRET/EiJ	ENSMSPG00010048326	lncRNA gene	Chr3:94619772-94656759 (+)
WSB/EiJ	ENSIUOG00005031561	lncRNA gene	Chr3:95002194-95038254 (+)

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Gene Tree

Gm5544

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References

1 with disease annotations

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Phenotype Summary

18 phenotypes from 1 allele in 1 genetic background
11 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

5
Chemically induced (other)

1
Radiation induced

1
Targeted

3
Genomic Mutations

2 involving Gm5544
Find Mice (IMSR)

4 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

6

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

37
RefSeq

2
UniProt

1

Ensembl

ENSMUSG00000074388 (Evidence)
NCBI Gene

433632

			Length	Strain/Species	Flank
genomic	433632	NCBI Gene Model \| MGI Sequence Detail	36846	C57BL/6J	± kb
transcript	NM_001033779	RefSeq \| MGI Sequence Detail	891	C57BL/6
polypeptide	NP_001028951	RefSeq \| MGI Sequence Detail	123	C57BL/6

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UniProt

1 Sequence

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All nucleic 6

cDNA 6

Microarray probesets 2

Summaries

All 26

Diseases 1

Phenotypes 11
Earliest

J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Gm5544:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30806	Chr3:97837591-97837600 (+)	107 bp
Tssr30807	Chr3:97837710-97837738 (+)	235 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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