Rpl21-ps11 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps11
• Name
  ribosomal protein L21, pseudogene 11
• Synonyms
  EG433630, Gm10089

• Feature Type
  pseudogene
• IDs
  MGI:3648207
  NCBI Gene: 433630
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:96573819-96574298 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648207	pseudogene	Chr3:96573784-96574337 (-)
129S1/SvImJ	ENSMUSG00200046145	pseudogene	Chr3:93202347-93202826 (-)
A/J	ENSMUSG00195050619	pseudogene	Chr3:93605839-93606318 (-)
AKR/J	ENSMUSG00220042257	pseudogene	Chr3:91951635-91952114 (-)
BALB/cJ	ENSMUSG00180042006	pseudogene	Chr3:93547742-93548221 (-)
C3H/HeJ	ENSMUSG00175032343	pseudogene	Chr3:93164253-93164732 (-)
C57BL/6NJ	ENSMUSG00215038123	pseudogene	Chr3:93929037-93929516 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020779	pseudogene	Chr3:93748472-93748951 (-)
CBA/J	ENSMUSG00210051427	pseudogene	Chr3:93717282-93717761 (-)
DBA/2J	ENSMUSG00185047680	pseudogene	Chr3:94170053-94170532 (-)
FVB/NJ	ENSMUSG00205027734	pseudogene	Chr3:92825692-92826171 (-)
JF1/MsJ	ENSUMUG00000049554	pseudogene	Chr3:93013811-93014290 (-)
LP/J	ENSMUSG00230045876	pseudogene	Chr3:96134178-96134657 (-)
NOD/ShiLtJ	ENSMUSG00190049734	pseudogene	Chr3:94262883-94263362 (-)
NZO/HlLtJ	ENSMUSG00225012288	pseudogene	Chr3:98512964-98513443 (-)
PWK/PhJ	ENSLUMG00010032964	pseudogene	Chr3:93006555-93007034 (-)
SPRET/EiJ	ENSMSPG00010046864	pseudogene	Chr3:93311039-93311518 (-)
WSB/EiJ	ENSIUOG00005031200	pseudogene	Chr3:93664260-93664739 (-)

Homology

• Gene Tree
  Rpl21-ps11
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl21-ps11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105144 (Evidence)
• NCBI Gene
  433630

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105144	Ensembl Gene Model | MGI Sequence Detail	480	C57BL/6J
transcript	ENSMUST00000077278	Ensembl | MGI Sequence Detail	480	Not Applicable

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rpl21-ps11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34638	Chr3:96574339-96574349 (-)	-46 bp