Gm5547 Gene Detail

Summary

• Symbol
  Gm5547
• Name
  predicted gene 5547

• Feature Type
  lncRNA gene
• IDs
  MGI:3648206
  NCBI Gene: 433637
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:105722883-105724675 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648206	lncRNA gene	Chr3:105708066-105724687 (+)
129S1/SvImJ	ENSMUSG00200035589	lncRNA gene	Chr3:102322431-102324264 (+)
A/J	ENSMUSG00195026479	lncRNA gene	Chr3:102742924-102744777 (+)
AKR/J	ENSMUSG00220034173	lncRNA gene	Chr3:101114884-101116733 (+)
BALB/cJ	ENSMUSG00180020292	lncRNA gene	Chr3:102688044-102689941 (+)
C3H/HeJ	ENSMUSG00175032197	lncRNA gene	Chr3:102223178-102225029 (+)
C57BL/6NJ	ENSMUSG00215034329	lncRNA gene	Chr3:102995357-102997190 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005700	lincRNA gene	Chr3:99846709-99849055 (+)
CAST/EiJ	ENSTCUG00005021227	lncRNA gene	Chr3:102954339-102956300 (+)
CBA/J	ENSMUSG00210008648	lncRNA gene	Chr3:102845163-102847016 (+)
DBA/2J	ENSMUSG00185022620	lncRNA gene	Chr3:103329362-103331211 (+)
FVB/NJ	ENSMUSG00205033412	lncRNA gene	Chr3:101899098-101900931 (+)
JF1/MsJ	ENSUMUG00000005101	lncRNA gene	Chr3:102071260-102073173 (+)
LP/J	ENSMUSG00230020098	lncRNA gene	Chr3:105250331-105252164 (+)
NOD/ShiLtJ	ENSMUSG00190039166	lncRNA gene	Chr3:103534069-103535962 (+)
NZO/HlLtJ	ENSMUSG00225020900	lncRNA gene	Chr3:107724420-107726310 (+)
PWK/PhJ	ENSLUMG00010030154	lncRNA gene	Chr3:102135700-102137560 (+)
SPRET/EiJ	ENSMSPG00010038274	lncRNA gene	Chr3:102334446-102337020 (+)
WSB/EiJ	ENSIUOG00005004944	lncRNA gene	Chr3:102860061-102862006 (+)

Homology

• Gene Tree
  Gm5547
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5547
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  70
• RefSeq
  1

• Ensembl
  ENSMUSG00000104835 (Evidence)
• NCBI Gene
  433637

Representative Sequences			Length	Strain/Species
genomic	433637	NCBI Gene Model | MGI Sequence Detail	1793	C57BL/6J
transcript	NR_045845	RefSeq | MGI Sequence Detail	459	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 10
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Gm5547:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31084	Chr3:105722846-105722871 (+)	-24 bp