Gm5947 Pseudogene Detail

Summary

• Symbol
  Gm5947
• Name
  predicted pseudogene 5947

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648189
  NCBI Gene: 546397
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:152862681-152865522 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648189	pseudogene	ChrX:152862559-152866873 (-)
129S1/SvImJ	ENSMUSG00200033799	pseudogene	ChrX:129630064-129630092 (-)
A/J	ENSMUSG00195039220	pseudogene	ChrX:134690511-134693355 (-)
AKR/J	ENSMUSG00220034069	pseudogene	ChrX:126547677-126547705 (-)
BALB/cJ	ENSMUSG00180041727	pseudogene	ChrX:130060489-130063331 (-)
C3H/HeJ	ENSMUSG00175026630	pseudogene	ChrX:134635980-134638824 (-)
C57BL/6NJ	ENSMUSG00215032405	pseudogene	ChrX:130376839-130379680 (-)
C57BL/6NJ	ENSMUSG00215016482	protein coding gene	ChrX:130427928-130449109 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033786	pseudogene	ChrX:132340502-132343344 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185045626	pseudogene	ChrX:146906156-146908997 (-)
FVB/NJ	ENSMUSG00205029285	pseudogene	ChrX:130577896-130577924 (-)
FVB/NJ	ENSMUSG00205025165	protein coding gene	ChrX:130589421-130594013 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230014012	pseudogene	ChrX:153689554-153692395 (-)
NOD/ShiLtJ	ENSMUSG00190041888	pseudogene	ChrX:131101920-131104764 (-)
NOD/ShiLtJ	ENSMUSG00190027947	protein coding gene	ChrX:131101802-131106134 (-)
NOD/ShiLtJ	ENSMUSG00190028006	protein coding gene	ChrX:131196884-131201464 (-)
NZO/HlLtJ	ENSMUSG00225042639	pseudogene	ChrX:157137456-157140301 (-)
PWK/PhJ	ENSLUMG00010035848	pseudogene	ChrX:128552119-128552147 (-)
SPRET/EiJ	ENSMSPG00010041648	pseudogene	ChrX:133431789-133434619 (-)
SPRET/EiJ	ENSMSPG00010042686	pseudogene	ChrX:133406711-133407377 (-)
WSB/EiJ	ENSIUOG00005042017	pseudogene	ChrX:131523263-131526104 (-)

Homology

• Gene Tree
  Gm5947
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  4

• Ensembl
  ENSMUSG00000095065 (Evidence)
• NCBI Gene
  546397

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095065	Ensembl Gene Model | MGI Sequence Detail	2842	C57BL/6J
transcript	ENSMUST00000179156	Ensembl | MGI Sequence Detail	714	Not Applicable
polypeptide	NP_001361144	RefSeq | MGI Sequence Detail	237	C57BL/6

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;