Gm6028 Pseudogene Detail

Summary

• Symbol
  Gm6028
• Name
  predicted gene 6028

• Feature Type
  pseudogene
• IDs
  MGI:3648170
  NCBI Gene: 547247
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:111808465-111809038 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 50.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648170	pseudogene	Chr1:111808367-111809064 (-)
129S1/SvImJ	ENSMUSG00200000450	pseudogene	Chr1:109262604-109263178 (-)
A/J	ENSMUSG00195008033	pseudogene	Chr1:108552875-108553449 (-)
AKR/J	ENSMUSG00220000234	pseudogene	Chr1:108640341-108640914 (-)
BALB/cJ	ENSMUSG00180000605	pseudogene	Chr1:108838246-108838820 (-)
C3H/HeJ	ENSMUSG00175000579	pseudogene	Chr1:108815825-108816399 (-)
C57BL/6NJ	ENSMUSG00215007214	pseudogene	Chr1:108804291-108804864 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002918	pseudogene	Chr1:107990618-107991192 (-)
CBA/J	ENSMUSG00210000187	pseudogene	Chr1:108709544-108710118 (-)
DBA/2J	ENSMUSG00185013687	pseudogene	Chr1:113108249-113108822 (-)
FVB/NJ	ENSMUSG00205008700	pseudogene	Chr1:108022533-108023106 (-)
JF1/MsJ	ENSUMUG00000028233	pseudogene	Chr1:111784715-111785289 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190000516	pseudogene	Chr1:108719074-108719648 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010000260	pseudogene	Chr1:108064290-108064864 (-)
SPRET/EiJ	ENSMSPG00010000540	pseudogene	Chr1:110293015-110293520 (-)
WSB/EiJ	ENSIUOG00005001114	pseudogene	Chr1:108420879-108421452 (-)

Homology

• Gene Tree
  Gm6028
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm6028
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000101875 (Evidence)
• NCBI Gene
  547247

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101875	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000077111	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6028:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13187	Chr1:111809064-111809065 (-)	-27 bp