Gm10561 Gene Detail

Summary

• Symbol
  Gm10561
• Name
  predicted gene 10561
• Synonyms
  EG628004

• Feature Type
  lncRNA gene
• IDs
  MGI:3648163
  NCBI Gene: 628004
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:55265776-55274783 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 28.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  283 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648163	lncRNA gene	Chr1:55265340-55274785 (+)
129S1/SvImJ	ENSMUSG00200018660	lncRNA gene	Chr1:52740748-52750120 (+)
A/J	ENSMUSG00195029306	lncRNA gene	Chr1:52297495-52306869 (+)
AKR/J	ENSMUSG00220043126	lncRNA gene	Chr1:52390986-52400387 (+)
BALB/cJ	ENSMUSG00180014403	lncRNA gene	Chr1:52566510-52575916 (+)
C3H/HeJ	ENSMUSG00175001236	lncRNA gene	Chr1:52672328-52681705 (+)
C57BL/6NJ	ENSMUSG00215032434	lncRNA gene	Chr1:52594395-52603771 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002336	antisense lncRNA gene	Chr1:49130445-49138847 (+)
CAST/EiJ	ENSTCUG00005013682	lncRNA gene	Chr1:52504953-52514457 (+)
CBA/J	ENSMUSG00210054060	protein coding gene	Chr1:52358968-52368718 (+)
CBA/J	ENSMUSG00210054124	lncRNA gene	Chr1:52359177-52368789 (+)
DBA/2J	ENSMUSG00185055665	lncRNA gene	Chr1:53478773-53488371 (+)
DBA/2J	ENSMUSG00185037130	protein coding gene	Chr1:53478564-53488300 (+)
FVB/NJ	ENSMUSG00205023519	lncRNA gene	Chr1:52320902-52330276 (+)
JF1/MsJ	ENSUMUG00000045505	lncRNA gene	Chr1:52445303-52454592 (+)
LP/J	ENSMUSG00230029049	lncRNA gene	Chr1:53487890-53497262 (+)
NOD/ShiLtJ	ENSMUSG00190044013	lncRNA gene	Chr1:52517194-52526567 (+)
NZO/HlLtJ	ENSMUSG00225009565	lncRNA gene	Chr1:56689723-56699090 (+)
PWK/PhJ	ENSLUMG00010026259	lncRNA gene	Chr1:52009408-52018687 (+)
SPRET/EiJ	ENSMSPG00010026589	lncRNA gene	Chr1:53779634-53787909 (+)
WSB/EiJ	ENSIUOG00005021178	lncRNA gene	Chr1:52161157-52170535 (+)

Homology

• Gene Tree
  Gm10561
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10561
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000097649 (Evidence)
• NCBI Gene
  628004

Representative Sequences			Length	Strain/Species
genomic	628004	NCBI Gene Model | MGI Sequence Detail	9008	C57BL/6J
transcript	NR_166487	RefSeq | MGI Sequence Detail	1539	C57BL/6
polypeptide	Q3UY33	UniProt | EBI | MGI Sequence Detail	77	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm10561:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6720	Chr1:55265770-55265781 (+)	0 bp