Rpl30-ps9 Pseudogene Detail

Summary

• Symbol
  Rpl30-ps9
• Name
  ribosomal protein L30, pseudogene 9
• Synonyms
  Gm6295

• Feature Type
  pseudogene
• IDs
  MGI:3648153
  NCBI Gene: 622202
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:104322243-104322587 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.88 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648153	pseudogene	ChrX:104322189-104322659 (-)
129S1/SvImJ	ENSMUSG00200038988	pseudogene	ChrX:86116107-86116451 (-)
A/J	ENSMUSG00195041674	pseudogene	ChrX:89849733-89850077 (-)
AKR/J	ENSMUSG00220039089	pseudogene	ChrX:84542218-84542562 (-)
BALB/cJ	ENSMUSG00180044221	pseudogene	ChrX:86515936-86516280 (-)
C3H/HeJ	ENSMUSG00175047798	pseudogene	ChrX:90091776-90092120 (-)
C57BL/6NJ	ENSMUSG00215047173	pseudogene	ChrX:86701861-86702205 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210045540	pseudogene	ChrX:86985420-86985764 (-)
DBA/2J	ENSMUSG00185045189	pseudogene	ChrX:99429764-99430108 (-)
FVB/NJ	ENSMUSG00205038710	pseudogene	ChrX:86061524-86061868 (-)
JF1/MsJ	ENSUMUG00000039226	pseudogene	ChrX:120046538-120046882 (-)
LP/J	ENSMUSG00230042482	pseudogene	ChrX:106116888-106117232 (-)
NOD/ShiLtJ	ENSMUSG00190039655	pseudogene	ChrX:86166280-86166624 (-)
NZO/HlLtJ	ENSMUSG00225045702	pseudogene	ChrX:111244063-111244407 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043128	pseudogene	ChrX:86670612-86670956 (-)

Homology

• Gene Tree
  Rpl30-ps9
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000085791 (Evidence)
• NCBI Gene
  622202

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085791	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000122265	Ensembl | MGI Sequence Detail	345	Not Applicable

Other
Accession IDs

MGI:3704516

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl30-ps9:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163993	ChrX:104322652-104322663 (-)	-71 bp