Gm5040 Pseudogene Detail

Summary

• Symbol
  Gm5040
• Name
  predicted gene 5040

• Feature Type
  pseudogene
• IDs
  MGI:3648144
  NCBI Gene: 268300
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:51114925-51115724 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 25.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648144	pseudogene	Chr10:51114905-51115766 (+)
129S1/SvImJ	ENSMUSG00200007605	pseudogene	Chr10:48004387-48005186 (+)
A/J	ENSMUSG00195002999	pseudogene	Chr10:48279028-48279827 (+)
AKR/J	ENSMUSG00220006782	pseudogene	Chr10:47959105-47959904 (+)
BALB/cJ	ENSMUSG00180012328	pseudogene	Chr10:48408718-48409517 (+)
C3H/HeJ	ENSMUSG00175010172	pseudogene	Chr10:48149944-48150743 (+)
C57BL/6NJ	ENSMUSG00215002368	pseudogene	Chr10:47913811-47914610 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008752	pseudogene	Chr10:48139134-48139932 (+)
CBA/J	ENSMUSG00210008521	pseudogene	Chr10:48053158-48053957 (+)
DBA/2J	ENSMUSG00185003416	pseudogene	Chr10:48209278-48210077 (+)
FVB/NJ	ENSMUSG00205005013	pseudogene	Chr10:48129013-48129812 (+)
JF1/MsJ	ENSUMUG00000031162	pseudogene	Chr10:47906713-47907511 (+)
LP/J	ENSMUSG00230006592	pseudogene	Chr10:50010880-50011679 (+)
NOD/ShiLtJ	ENSMUSG00190005823	pseudogene	Chr10:48373586-48374385 (+)
NZO/HlLtJ	ENSMUSG00225022946	pseudogene	Chr10:54291782-54292581 (+)
PWK/PhJ	ENSLUMG00010004652	pseudogene	Chr10:48046282-48047081 (+)
SPRET/EiJ	ENSMSPG00010014054	pseudogene	Chr10:49239117-49239916 (+)
WSB/EiJ	ENSIUOG00005015052	pseudogene	Chr10:47993060-47993859 (+)

Homology

• Gene Tree
  Gm5040
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111880 (Evidence)
• NCBI Gene
  268300

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111880	Ensembl Gene Model | MGI Sequence Detail	800	C57BL/6J
transcript	ENSMUST00000218609	Ensembl | MGI Sequence Detail	800	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87